SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene168

Length: 1814 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene168

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tRNA intron endonuclease [Arabidopsis thaliana] dbj\|BAA88628.1\| tRNA intron endonuclease [Arabidopsis thaliana]	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%

Source	ECs	Term	Type	e value	Identity
Sma3	tRNA-intron endonuclease.	EC:3.1.27.9	-	1.791e-17	-

Source	Gene names
Sma3	At3g45590; At5g60230; F15L12.18; F9K21.170; GSVIVT00024474001; LOC_Os11g38930; MtrDRAFT_AC155881g9v1; Os06g0530700; Os11g0602400; OsI_23228; OsJ_34425; PHYPADRAFT_125452; POPTRDRAFT_557107; RCOM_1398820; SEN1; SEN2;

Source	GOs	Term	Type	Identity
Sma3	tRNA-intron endonuclease complex	GO:0000214	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	tRNA-intron endonuclease activity	GO:0000213	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	tRNA splicing, via endonucleolytic cleavage and ligation	GO:0006388	Biological Process	-
Sma3	mRNA processing	GO:0006397	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	tRNA-splicing endonuclease	IPR006676	-	-
Sma3	tRNA intron endonuclease, catalytic domain-like	IPR006677	-	-
Sma3	tRNA intron endonuclease, N-terminal	IPR006678	-	-
Sma3	Endonuclease TnsA, N-terminal/resolvase Hjc/tRNA endonuclease, C-terminal	IPR011856	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G45590.1	ATSEN1, SEN1 splicing endonuclease 1 chr3:16733062-16733775 FORWARD LENGTH=237	45%
RefSeq	Arabidopsis thaliana	NP_190145.1	tRNA-splicing endonuclease subunit Sen2-1 [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002313727.1	predicted protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8R2

Fln msg:

Fln protein: MDRGGVRWKSRDAAAIADADPMSKIIYQLQSSLEQSQTCGLLSGSAVLIQAGSDLTKLLNRACFGRPIITAPPTSSCSLKGMKYKLGEQQSDLD*QSWQLGMEEAFYLSYSLNCLRICRSTCEGHQNLNPEEIWRHMKERQMMFLQHYKAYSHLRAKNWVVRSGLQYGADFVAYRHHPALVHSEYAVIISSESDVRQARLTTWSDWQSTLRLCGSVAKTLLVLSIVPSGNKIEETSPTCLDDYYVEEFEIRRWIAEKHREDPQSGKDKT*

Protein Length: 271

Fln nts: CACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGAGCCCATAGATGCGATATACTACAATGGAGTCCATATTATCCATGAGAGGTTTAGTGATATGACAGCGGGGGTTGCTGCTGCACAACATCGAGGGAGCAGTGGAGGTGGGGAGTCTTGAGCATCGAGGGAGCAGTGGAGAGTTTCGAGTAATGTGGGATTAATGGTCGGTGTTCTTCCAGAGGGCACGCGAATAATAAATGCGCAACACAGGGTTATATGATCAGGTGGGTTCACTAGTGGGAGGGTAGGAGTGGCCCAATGGATGTGAATGGGGTTTGCAGAAGCGGGGACACATAAGGTGGGTGGAGAAGCTAAGGAAGCTATAGGAGGACAGGGCAAATATACACATATTTGCGGCATCTTAATAATAGCCTCTCACAAATTCA_-_ATGGATAGAGGTGGGGTAAGATGGAAAAGCAGAGATGCAGCGGCGATTGCTGATGCAGATCCCATGTCTAAAATAATATATCAACTTCAATCTTCTTTGGAACAGTCTCAGACTTGTGGGTTGCTCTCTGGTTCTGCTGTGCTTATACAAGCAGGATCGGATCTAACAAAGCTGCTAAATCGTGCCTGTTTTGGACGACCCATAATTACTGCTCCTCCGACATCTTCATGTTCTTTAAAAGGAATGAAATATAAACTAGGGGAGCAACAAAGTGACCTTGACTGACAATCATGGCAATTGGGTATGGAAGAAGCTTTTTATCTCAGTTACTCTCTTAACTGTCTAAGGATTTGCCGTTCGACCTGTGAGGGGCATCAGAATTTGAACCCTGAGGAAATATGGAGGCACATGAAAGAAAGACAAATGATGTTTTTGCAACATTACAAGGCATATTCTCATCTTCGAGCAAAGAATTGGGTGGTGCGATCAGGTCTGCAATACGGTGCTGATTTTGTGGCTTATCGTCACCATCCTGCTCTTGTTCACTCAGAGTATGCAGTGATTATATCCTCTGAAAGTGATGTCAGACAAGCTCGACTAACAACATGGTCTGATTGGCAGTCTACACTTCGCCTTTGTGGCAGTGTTGCGAAGACATTATTGGTCTTAAGTATAGTGCCAAGCGGCAATAAAATTGAGGAAACATCTCCAACATGTTTGGATGATTACTATGTGGAAGAATTTGAAATTAGAAGATGGATTGCAGAGAAGCATCGAGAGGATCCCCAATCGGGGAAAGATAAAACGTAA___CTAACGTCCCTCTTTGGAATTCCATTTTGTCATAAATTTGTGGTGTGAATCCATTCAAGGGTTTTCGATGTTTTTTATTATCACTTAAAAATTTAAAATATCTACAGAAGAATTCAGATTATTTGAGATATCTACAATTACAATTCAAAAGTAATTGTAGTACCTGGAAGAAATTCCAAAGAAATGTTCCTATCCATGAAAGATTAGCTAGTTGCAGCTTTGTCACAGCATGTACGTCTTGTGAGATGCATGGATGCCAGTTATAGGCTAAACTAATATAACTTGAAGGTGAACGGTTAGCTGGATGCAGATTTGTCACAAACACTCACAGCATGTACGTCTTTTCAGATGCATGGATGCCACTAGTTGCCATGATATCAGGTTTGAAAAATGATGTGCAATATGTGATGGGATGCTTTGTTAGCACCTAACCTTTGATAATCTATCAGAAATCCAGAAAAGCTAAAAAATGGAAGAGAGAACGTAGGGGAGTGCAGCCAGAAGTTGAGCGGGGTGCAATAGTTGTGACAGGAGTTGTGGTGGTGGGCTCCAGTCTTGTATTAATTTAAAAACATTTTG

Fln Alignment:

Contig168___MDRGGVRWKSRDAAAIADADPMSKIIYQLQSSLEQSQTCGLLSGSAVLIQAGSDLTKLLNRACFGRPIITAPPTSSCSLKGMKYKLGEXXXXXXXXXXXXGMEEAFYLSYSLNCLRICRSTCEGHQNLNPEEIWRHMKERQMMFLQHYKAYSHLRAKNWVVRSGLQYGADFVAYRHHPALVHSEYAVIISSESDVRQARLTTWSDWQSTLRLCGSVAKTLLVLSIVPSGNKIEETSPTCLDDYYVEEFEIRRWIAEKHREDPQSGKDKT
D5A8R2_____________MDGGGVRWKNRDAAAIADADPMSKIIYRLQSSLEQSETCGLFSGSAVLIQAGSELTKLLNRACFGRPIITAPPTSSCSLKGTKYKLDGEQQSADLQWFQLGMEEAFYLNYSLNCLTICRSTREGRQNLNAEEIWRHMKERQKMFLQHYKAYSHLRAKNWVVRSGLQYGADFVAYRHHPALVHSEYAVIISSESDVGQARLTTWSDWQSTLRLCGSVAKTLLVLSIMPRGNKTDETSPTCLDDYFVEEFEIRGWIAEKHREDPRSGKDKT

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
74	75		25		0.996473
75			25	75	0.996473
76			25	75	0.996473
116	25		75		0.996473
136	16	83			0.994512
259	90			10	0.90298
372		83	16		0.994512
955		50		50	1.0
998	50			50	1.0
1097	83			16	0.994512
1127	40		60		1.0
1349	50			50	1.0
1422		15		84	0.999986
1427		84	15		0.999986
1429	84		15		0.999986
1430	15			84	0.999986
1433	86			13	0.999973
1436	86		13		0.999973
1437	86	13			0.999973
1438	86			13	0.999973
1442		13		86	0.999973
1444		13	86		0.999973
1596			87	12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain