SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene116

Length: 2777 nt

UniGene Fasta

>sp_v3.0_unigene116
CATATGTACCTCCAGATCCAGGTCCTTATCCACAGGATCAGCCAAAGAAAAACAATGTCAGGTTCACTCCAGTTCAGATTGGTGCTATCATATCTGGCATTCAACCAGGATTGACAATGGTGGTAGGTCCTCCTGGGACAGGGAAAACAGATACAGCTGTGCAGATTCTGAATGTGTTGTATCACAATTGTCCTTCCCAGAGAACGTTGATAATCACTCACTCTAATCAGGCTTTGAATGATCTCTTTGAAAAGATTATGCAGAGGGATGTTCCTGCTCGATACCTTCTACGTCTGGGTCAGGGTGAGCAGGAATTGGCAACAGATGTTGAATTTAGTCGACAAGGTCGAGTTAATGCTATGCTAGCACGGCGGTTGGAGTTGTTGGCAGAAGTTGAGAGGCTTGCAAAAACATTGCATCTACCAGAAGACGTTGGATATACATGTGAAACTGCAGGATACTTCTGGCTTTTGCATGTTTATTCTCGGTGGGAACAATTTCTTGCTGCTTGTGAAAGTAATCGGGATAAAGCTAGTTTTGTGAAAGACAGATTCCCATTTAAGGAGTTCTTCTCAGACACACCTCAACCAGTATTCACAGGCTTGTCGTTTGAACGAGACATGCGTGCAGCAAAAGGTTGCTTCCGCCATCTTACTACCATGTTTCAAGAACTTGAAGAGTGTAAGGCATTTGAATTACTGAAATCAACTGCTGACCGTGCAAATTATCTCATGACCAAGCAAGCCAAAGTTGTTGCTATGACCTGTACCCATGCTGCACTGAAGAGAAAAGATTTTCTTCAGTTAGGTTTTAAGTATGACAATTTGCTAATGGAGGAAAGTGCACAGATTTTGGAGATAGAGACATTCATACCCATGTTGTTACAAAGACAAGAAGATGGACATGCAAGGCTTAAGCGTTGCATATTGATTGGTGATCATCATCAGTTACCACCAGTAGTTAAGAACATGGCTTTCCAGAAGTACAGCCACATGGACCAGAGTCTGTTCACTAGGTTTGTTCGCTTAGGAATTCCCTATGTTGAACTCAATGCACAAGGTAGAGCAAGGCCAAGTATAGCAAAGCTTTACAACTGGAGATACAGGCAGTTAGGTGATCTATCATACGTTCAAAAAGAACGTGTGTTTCATCTTGCAAATACAGGTTTCTGCTATGAATATCAACTTGTAGATGTCCCTGATCACCGTGGCATGGGTGAATCTGAACCTGTTCCTTGGTTTTATCAAAACCTTGGTGAAGCAGAATATGTTGTGAGTGTTTATATGTACATGCGATTGCTAGGCTACCCTGCCAGCAAAATATCTATCTTAACTACTTACAATGGTCAAAAGCACTTGATTCGTGATGTGATCAGACAAAGATGTGCCTCACATCCTCTTATTGGATCTCCAAGCAAGGTTACAACTGTTGACAGGTTTCAAGGTCAACAAAATGACTATATTTTGCTTTCTCTAGTCCGAACCAGATTTGTAGGCCACCTTCGAGATGTTCGTAGACTTGTTGTTGCCATGTCACGTGCTCGGTTGGGCTTATACGTATTCTGTCGTCGCTCTTTGTTCGAACAATGCTATGAATTACAACCCACTTTTCAACTTCTACTCCAACGACATGATAGACTTGCTTTGAATTTGGACGAAACAACTTGCCCCACAGAGCGTTTTGTTGGGGACACTGGCAGAATTCATCTTGTGAGTGGACTTGAGGAGATGGAGCACATTGCCATGAGCAAATTTTATCAACTTTATCAGGGACAAACAATAGGGCAACAGGTCACTATCCATTATTCTAATCAGCAAATACATGGATACAATTCAGGGGCAACTATGCCAATGAATACTAATTTTCCAGCTGAGCAGAGATTGCTGGTTGAGCCTGGCTTCATTCCTTACAGGTCTCCTGAAACAGAGAAAAATGCTGAAGCCCCTGTGGATGATAAATTGGACAAAAACAATGATATGCAATAGTGATGTCTACTTTCGACCATGCATGTTTTACTTGATGTTAAGAGGAGAGGCTGGACATAGTGACATCGTGTTGTTCAAATGCTTACACATGGAAACTTTATGGGAAGGTGTACACTCTTGCCACCTGTGATTTTTGAAGAAGCTTCAAGAAGGAATTATGGTGCCTCTTTGCTGGGAAAAAGATGCAGGATGACTATGATCTGAAAATACATTAGGGTCGGATTTCTTCATCCAACATGGAATTGTTCTATTAGGGTTCAAAATTGATTGGCACCTGCTTCTATAAGTGGAAAGAAAAATTTTAATGGGATAAAATTCTATTGTTAGATGGAGTTAGTAATTCTGCTTTTTCTTGCTATCCCAAGAAGGCTTGCTGCCACTATCAGTGTGCAGATGTCAGAAATTTGAGGATGTGATAAACATGACTTCGCAAGCATACATGTGGTGGTTAATCAATAGTAATTGGGTAATTCCTTGATTACGAGTTGAAATGTGGTGATAACTGTGCGATACTATATAGCGTTGTATTTAACATTTCGACTTTATAATGAAGTTTGTGAAGTTACTGTATAATTTTACACATGATGTCAGTATCAGCCATTGCACTATATTGTCTTGTGGGGGTGGTTATGAGCATCATTTAATCAAATACAACATAGGCTTCGTATGCTGTGGACTATGCAGTTTAATCATATGGCACGCATTTGAAAGATATTTTCACCTTTCTTATAGCGAACTTTGTAAAGTCACTGTATCCATATTCATATATGAGATGAGGATTAACCATTGACG

Ace file of the UniGene sp_v3.0_unigene116

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aquarius n=228 Tax=core eudicotyledons RepID=E5GCK6_CUCME	-	-	0.0	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%

Source	Gene names
Sma3	276; At2g38770; CHLREDRAFT_115185; GSVIVT00005499001; GSVIVT00033709001; LOC_Os03g26960; MICPUCDRAFT_13860; MICPUN_78105; OSJNBb0058G04.12; OSTLU_38450; Os03g0387000; OsI_11850; OsJ_11087; Ot05g00630; PHATRDRAFT_259; PHYPADRAFT_200891; POPTRDRAFT_547843;

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-
Sma3	chloroplast	GO:0009507	Cellular Component	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G38770.1	EMB2765 P-loop containing nucleoside triphosphate hydrolases superfamily protein chr2:16203185-16210253 REVERSE LENGTH=1509	83%
RefSeq	Arabidopsis thaliana	NP_850297.1	intron-binding protein aquarius [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002303913.1	predicted protein [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLV2

Fln msg: your sequence is shorter than subject: 661 - 691

Fln protein: YVPPDPGPYPQDQPKKNNVRFTPVQIGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYLLRLGQGEQELATDVEFSRQGRVNAMLARRLELLAEVERLAKTLHLPEDVGYTCETAGYFWLLHVYSRWEQFLAACESNRDKASFVKDRFPFKEFFSDTPQPVFTGLSFERDMRAAKGCFRHLTTMFQELEECKAFELLKSTADRANYLMTKQAKVVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPMLLQRQEDGHARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYVELNAQGRARPSIAKLYNWRYRQLGDLSYVQKERVFHLANTGFCYEYQLVDVPDHRGMGESEPVPWFYQNLGEAEYVVSVYMYMRLLGYPASKISILTTYNGQKHLIRDVIRQRCASHPLIGSPSKVTTVDRFQGQQNDYILLSLVRTRFVGHLRDVRRLVVAMSRARLGLYVFCRRSLFEQCYELQPTFQLLLQRHDRLALNLDETTCPTERFVGDTGRIHLVSGLEEMEHIAMSKFYQLYQGQTIGQQVTIHYSNQQIHGYNSGATMPMNTNFPAEQRLLVEPGFIPYRSPETEKNAEAPVDDKLDKNNDMQ*

Protein Length: 662

Fln nts: CATATGTACCTCCAGATCCAGGTCCTTATCCACAGGATCAGCCAAAGAAAAACAATGTCAGGTTCACTCCAGTTCAGATTGGTGCTATCATATCTGGCATTCAACCAGGATTGACAATGGTGGTAGGTCCTCCTGGGACAGGGAAAACAGATACAGCTGTGCAGATTCTGAATGTGTTGTATCACAATTGTCCTTCCCAGAGAACGTTGATAATCACTCACTCTAATCAGGCTTTGAATGATCTCTTTGAAAAGATTATGCAGAGGGATGTTCCTGCTCGATACCTTCTACGTCTGGGTCAGGGTGAGCAGGAATTGGCAACAGATGTTGAATTTAGTCGACAAGGTCGAGTTAATGCTATGCTAGCACGGCGGTTGGAGTTGTTGGCAGAAGTTGAGAGGCTTGCAAAAACATTGCATCTACCAGAAGACGTTGGATATACATGTGAAACTGCAGGATACTTCTGGCTTTTGCATGTTTATTCTCGGTGGGAACAATTTCTTGCTGCTTGTGAAAGTAATCGGGATAAAGCTAGTTTTGTGAAAGACAGATTCCCATTTAAGGAGTTCTTCTCAGACACACCTCAACCAGTATTCACAGGCTTGTCGTTTGAACGAGACATGCGTGCAGCAAAAGGTTGCTTCCGCCATCTTACTACCATGTTTCAAGAACTTGAAGAGTGTAAGGCATTTGAATTACTGAAATCAACTGCTGACCGTGCAAATTATCTCATGACCAAGCAAGCCAAAGTTGTTGCTATGACCTGTACCCATGCTGCACTGAAGAGAAAAGATTTTCTTCAGTTAGGTTTTAAGTATGACAATTTGCTAATGGAGGAAAGTGCACAGATTTTGGAGATAGAGACATTCATACCCATGTTGTTACAAAGACAAGAAGATGGACATGCAAGGCTTAAGCGTTGCATATTGATTGGTGATCATCATCAGTTACCACCAGTAGTTAAGAACATGGCTTTCCAGAAGTACAGCCACATGGACCAGAGTCTGTTCACTAGGTTTGTTCGCTTAGGAATTCCCTATGTTGAACTCAATGCACAAGGTAGAGCAAGGCCAAGTATAGCAAAGCTTTACAACTGGAGATACAGGCAGTTAGGTGATCTATCATACGTTCAAAAAGAACGTGTGTTTCATCTTGCAAATACAGGTTTCTGCTATGAATATCAACTTGTAGATGTCCCTGATCACCGTGGCATGGGTGAATCTGAACCTGTTCCTTGGTTTTATCAAAACCTTGGTGAAGCAGAATATGTTGTGAGTGTTTATATGTACATGCGATTGCTAGGCTACCCTGCCAGCAAAATATCTATCTTAACTACTTACAATGGTCAAAAGCACTTGATTCGTGATGTGATCAGACAAAGATGTGCCTCACATCCTCTTATTGGATCTCCAAGCAAGGTTACAACTGTTGACAGGTTTCAAGGTCAACAAAATGACTATATTTTGCTTTCTCTAGTCCGAACCAGATTTGTAGGCCACCTTCGAGATGTTCGTAGACTTGTTGTTGCCATGTCACGTGCTCGGTTGGGCTTATACGTATTCTGTCGTCGCTCTTTGTTCGAACAATGCTATGAATTACAACCCACTTTTCAACTTCTACTCCAACGACATGATAGACTTGCTTTGAATTTGGACGAAACAACTTGCCCCACAGAGCGTTTTGTTGGGGACACTGGCAGAATTCATCTTGTGAGTGGACTTGAGGAGATGGAGCACATTGCCATGAGCAAATTTTATCAACTTTATCAGGGACAAACAATAGGGCAACAGGTCACTATCCATTATTCTAATCAGCAAATACATGGATACAATTCAGGGGCAACTATGCCAATGAATACTAATTTTCCAGCTGAGCAGAGATTGCTGGTTGAGCCTGGCTTCATTCCTTACAGGTCTCCTGAAACAGAGAAAAATGCTGAAGCCCCTGTGGATGATAAATTGGACAAAAACAATGATATGCAATAG___TGATGTCTACTTTCGACCATGCATGTTTTACTTGATGTTAAGAGGAGAGGCTGGACATAGTGACATCGTGTTGTTCAAATGCTTACACATGGAAACTTTATGGGAAGGTGTACACTCTTGCCACCTGTGATTTTTGAAGAAGCTTCAAGAAGGAATTATGGTGCCTCTTTGCTGGGAAAAAGATGCAGGATGACTATGATCTGAAAATACATTAGGGTCGGATTTCTTCATCCAACATGGAATTGTTCTATTAGGGTTCAAAATTGATTGGCACCTGCTTCTATAAGTGGAAAGAAAAATTTTAATGGGATAAAATTCTATTGTTAGATGGAGTTAGTAATTCTGCTTTTTCTTGCTATCCCAAGAAGGCTTGCTGCCACTATCAGTGTGCAGATGTCAGAAATTTGAGGATGTGATAAACATGACTTCGCAAGCATACATGTGGTGGTTAATCAATAGTAATTGGGTAATTCCTTGATTACGAGTTGAAATGTGGTGATAACTGTGCGATACTATATAGCGTTGTATTTAACATTTCGACTTTATAATGAAGTTTGTGAAGTTACTGTATAATTTTACACATGATGTCAGTATCAGCCATTGCACTATATTGTCTTGTGGGGGTGGTTATGAGCATCATTTAATCAAATACAACATAGGCTTCGTATGCTGTGGACTATGCAGTTTAATCATATGGCACGCATTTGAAAGATATTTTCACCTTTCTTATAGCGAACTTTGTAAAGTCACTGTATCCATATTCATATATGAGATGAGGATTAACCATTGACG

Fln Alignment:

Contig116___AKVVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPMLLQRQEDGHARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRL---GIPYVELNAQGRARPSIAKLYNWRYRQL--GDLSYVQKERVFHLANTGFCYEYQLVDVP----DHR------GMGESEPVPWF----YQNLGEAEYVVSVYMYMRLLGYPASKISILTTYNGQKHLIRDVIRQRCASHPLIGSPSKVTTVDRFQGQQNDYILLSLVRTRF---VGHLRDVRRLVVAMSRARLGLYVFCRRSLFEQCYELQPTFQLLLQRHDRL
B8LLV2_____________AQVVLCTNTGAA---DPLVRKLASFDLVIIDEAGQAIEPSCWIPIL---------QGKRTILAGDNCQLAPVILSRRAME-GGLGLSLLERAARLYAGGLSHM-LSVQYRMNDAIA---SWASKEMYGGSLQSSPAVASHLLVDSPFIKATWITQCPLLLLDTRMPYGSLSLGCEEHLDLAGTGSFYNEGEADILVQHVRSLIFAGVMPMDIAVQSPYIAQVQLLRERLDQIPEAAGI-----RVASVDSFQGREADAVVISMVRSNTLGAVGFLGDSRRINVAITRARKHVAVVCDSSTI--CHN---TFLARLLKHIRL

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
1782	88		11		0.923564
1977	88		11		0.923564
1978		11		88	0.923564
1979	88		11		0.923564
1981			88	11	0.923564
1983	87	12			0.992554
1984	87			12	0.992554
1986	87		12		0.992554
1990	87	12			0.992554
1991	12			87	0.992554
1992		12	87		0.992554
2030	85		14		0.993533
2046	85			14	0.993533
2080	90		10		0.90298
2108		90		10	0.90298
2114		10	90		0.90298
2115	10			90	0.90298
2223	22	77			0.999999
2259	50	50			1.0
2274			55	44	1.0
2305		14		85	0.993533
2308	14			85	0.993533
2317	85	14			0.993533
2353	66		33		1.0
2357		33	66		1.0
2377		33	66		1.0
2493		16		83	0.994512
2494	16		83		0.994512
2496			83	16	0.994512
2713	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain