SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26496

Length: 853 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene26496

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome c oxidase subunit 5C n=8 Tax=Poaceae RepID=COX5C_ORYSJ	-	-	2.0e-11	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	cytochrome c oxidase subunit 5c-like	-	-	1.49452e-20	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	1.49452e-20	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.49452e-20	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome c oxidase subunit Vc	IPR008432	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
162	80	20			0.995493
164		20	80		0.995493
165	80		20		0.995493
166	80			20	0.995493
167	80		20		0.995493
171		80		20	0.995493
172			80	20	0.995493
176	80	20			0.995493
178			20	80	0.995493
180		20		80	0.995493
183	12		87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain