SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26409

Length: 1023 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene26409

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cytochrome P450 enzyme [Pisum sativum]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	6-deoxocastasterone oxidase	-	-	75%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P221

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 185 aas, your sequence is shorter than subject: 284 - 432

Fln protein: MDILSTMALGFIFLCSIIALLRWNEVRYGKKGLPPGTMGWPLFGETPDFLRYGQQFIKNRKARYGDLFKTHILGCPTVISTDPAVNRYILLNEGRGLIPGYPQSMLDILGKWNIAAVQSDLHKTMRGAMLALINPSMIKGHLLSDINEFMDIHLQYWNDRVINLQDKTKEMALLLSLQQVMSIKSGPKAEAFVSEFCKLVEGTISMPINLPGTSYKRGFQARENILRMLREVLKERRASMDTYNDMIAMLLNDKEGEADGTSANCKLTDEQIFDLLISIINVG*

Protein Length: 285

Fln nts: TTTTCCAACGAACAATGATTAACAGGGCTGCTTTATATCACATATCTCAAATCGCCTGAGGTTGCACAGGATCCTATTAGAGAGGCAAGACTGAGGCCTAATTGTGGTATTTGAGGGGATTTGAAGGCCTGAAAATTCAAAAGGGCCAACGTGGGTACGAGGCCAGAG_-_ATGGATATTTTAAGCACAATGGCTTTGGGTTTCATTTTTCTCTGCAGTATAATCGCTTTGCTGCGCTGGAATGAAGTTAGATACGGCAAGAAAGGCCTTCCTCCAGGCACCATGGGATGGCCTCTCTTTGGAGAAACTCCTGATTTTCTCAGATATGGTCAACAATTTATCAAAAACAGAAAGGCCAGATATGGAGATTTGTTCAAGACTCACATTCTAGGATGCCCGACGGTGATATCGACGGATCCAGCTGTCAACAGATATATCTTATTGAATGAAGGCCGAGGACTAATTCCTGGATACCCGCAGTCTATGCTTGACATATTGGGAAAATGGAACATTGCTGCTGTTCAAAGCGATCTTCATAAAACCATGAGAGGAGCCATGCTCGCATTGATCAATCCCTCCATGATCAAAGGCCACCTGCTTTCTGATATCAACGAGTTCATGGACATACATCTGCAATATTGGAATGACCGCGTAATCAATCTGCAGGATAAAACTAAAGAGATGGCTTTGCTTTTGTCTTTACAGCAGGTAATGAGTATCAAGTCTGGTCCGAAGGCAGAGGCATTTGTGTCAGAATTCTGTAAACTCGTGGAAGGAACCATTTCCATGCCTATAAATCTTCCTGGTACCAGCTACAAACGTGGTTTCCAGGCAAGGGAAAATATCCTGAGAATGTTGAGAGAAGTGCTCAAGGAAAGGAGGGCTTCCATGGACACTTATAATGATATGATTGCAATGCTTCTTAATGACAAAGAAGGAGAAGCAGATGGCACATCTGCTAATTGCAAGCTCACAGATGAACAGATCTTCGATTTACTAATATCTATTATCAATGTTGGCTAACCG

Fln Alignment:

Contig26409___MGWPLFGETPDFLRYGQQFIKNRKARYGDLFKTHILGCPTVISTDPAVNRYILLNEGRGLIPGYPQSMLDILGKWNIAAVQSDLHKTMRGAMLALINPSMIKGHLLSDINEFMDIHLQYWNDRVINLQDKTKEMALLLSLQQVMSIKSGPKAEAFVSEFCKLVEGTISMPINLPGTSYKRGFQARENILRMLREVLKERRASMDTYNDMIAMLLNDKEGEADGTSANCKLTDEQIFDLLISIINVG
A9P221_______________MGWPLFGETSDFLKSGQKFIKIRRARYGELFRSHILGCPTVISTDPALNRYILLNEGRGLIPGYPQSMLDILGKWNIAAVQNSLHKTMRGAMLALINPSMIKDHLLSDINNFMDIHFQHWNDRVINLQDKTKEMALLLSLKQVMSMNSGPKAEAFMLEFYKLVEGTISMPINLPGTSYRRGFQARENVLRMLREVLRERRASTDTHNDMIAMLLNDKE-EEDGASVNSKLTDEQILDLLISIINAG

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
583		83	16		0.994512
584	83		16		0.994512
635		16		83	0.994512
709	20	80			0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain