SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26361

Length: 815 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene26361 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os01g0739000 protein n=3 Tax=Oryza sativa RepID=Q5JNL6_ORYSJ	-	-	9.0e-09	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	mitochondrial-processing peptidase subunit alpha-like	-	-	0.0	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular	GO:0005622	Cellular Component	0.0	85%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L22/L17	IPR001063	-	-
Sma3	Peptidase M16, zinc-binding site	IPR001431	-	-
Sma3	Ribosomal protein L22, bacterial-type	IPR005727	-	-
Sma3	Peptidase M16, C-terminal	IPR007863	-	-
Sma3	Peptidase M16, core	IPR011237	-	-
Sma3	Peptidase M16, N-terminal	IPR011765	-	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
292	90		10		0.90298
366	15	84			0.999986
379	84		15		0.999986
423		23	76		1.0
584	91	8			0.999807
585	91	8			0.999807
586	91	8			0.999807
588			91	8	0.999807
630		9		90	0.999872
728		20	80		0.999996
729	80	20			0.999996
731	10		90		0.90298
755	87		12		0.992554
760		12		87	0.992554
761	87			12	0.992554
764		16	83		0.994512
765		16	83		0.994512
768	16			83	0.994512
773		16		83	0.994512
774	83	16			0.994512
775		33	66		1.0
776		16	83		0.994512
777	83	16			0.994512
778	83	16			0.994512
779			83	16	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
421	432	GGA GGA GGA GGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain