SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26205

Length: 1137 nt

Origin of reads: Inia v1

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene26205

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WD-40 repeat protein-like n=7 Tax=Poaceae RepID=Q7EYE2_ORYSJ	-	-	66%
FL-Next	sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress).	-	-	56%
Blast2go	topless-related protein 3-like	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q94AI7

Fln msg: Separated hits, possible frame ERROR between 424 and 529, your sequence is shorter than subject: 245 - 1131

Fln protein: ITGLAFSHSLNILVSSGADAQLCVWGIDGWDKRKSKYIQLQASRPSPVDGDTRVLFHNDQVHLLAVHESQLAIYNAAKLDRLCHWTPHDSLSASISNATYSCDGLLIYVSFIDGAVGVFDSENLRPHCRIAPSIYIQPGLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMCSGNVYPLVIAAHPSEPNQFAVGLTDGGIQVIEPLESECKWGIRPLDNGTVNSNPAASNQGSELHSR*

Protein Length: 246

Fln nts: AATCACTGGTCTGGCATTTTCTCATTCTCTCAATATTTTGGTATCTTCCGGGGCTGATGCTCAGCTTTGTGTATGGGGTATAGATGGATGGGATAAGCGAAAGTCAAAATATATTCAGTTGCAGGCGTCAAGACCATCACCAGTTGATGGAGATACTAGAGTATTGTTCCATAATGATCAAGTCCACTTGTTGGCCGTGCATGAGAGCCAGCTTGCTATTTATAATGCTGCTAAATTGGATCGCTTGTGCCATTGGACGCCCCATGATTCACTGTCTGCATCAATTTCAAATGCAACATACTCATGTGACGGCCTTCTAATCTATGTTAGCTTCATCGATGGTGCTGTTGGAGTATTTGATTCAGAAAACTTGAGGCCACATTGCCGTATTGCACCTTCCATATATATACAGCCGGGCTTGAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTATGTGCAGTGGCAATGTCTATCCACTTGTGATTGCCGCACATCCATCAGAACCTAATCAGTTTGCCGTTGGGTTGACTGATGGAGGTATTCAAGTGATTGAGCCTCTAGAATCAGAATGCAAATGGGGTATAAGGCCTCTGGATAATGGAACTGTCAATTCAAATCCAGCTGCAAGCAATCAAGGGTCAGAATTACATTCAAGGTAACGCTTGAAGAGCAGAGTTGAAAGAAAAAAAGGAGGAAGAAAAATCAGAGTCATTTGTGCTACCTTGTGCCTTTACAATTATGATTTATCTGTTCGTATATCTACCACCAATAGTGGTGCCATCTATCAGAGTCATTTGTCCTACCTTGTGCCTTACAATTATGATTTATCTGTTTGTATATCTACCATCAATAGTGGTGCCATCTTACCAGGATCATTTCTCTTTATACTAAATTGTTAGCAGAGGTTTTGATATTTTGTTTTGAGAGGGTGTGGTATGGAAGGCATATTGGCAAGATTGTAATTTCTTACTGGAACTAGTTCAGGAAAAATGCCATGGAGCAAAGACTCTGCATGTAATGTAAATGATTTCAAGCATAATGACTACATGTTGTAGCTTTGG

Fln Alignment:

Contig26205___ITGLAFSHSLNILVSSGADAQLCVWGIDGWDKRKSKYIQLQASRPSPVDGDTRVLFHNDQVHLLAVHESQLAIYNAAKLDRLCHWTPHDSLSASISNATYSCDGLLIYVSFIDGAVGVFDSENLRPHCRIAPSIYIQPGLSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMCSGNVYPLVIAAHPSEPNQFAVGLTDGGIQVIEPLESECKWGIR-PLDNGTVNSNPAASNQGS
Q94AI7_______________ITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRESL-APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSNSNVHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGA

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
681	11			88	0.923564
685	88			11	0.923564
687		11		88	0.923564
688			11	88	0.923564
693		12		87	0.992554
726		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain