SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26198

Length: 994 nt

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene26198

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	elongation factor EF-P [Arabidopsis thaliana] gb\|AAL36090.1\| putative elongation factor P (EF-P) [Arabidopsis thaliana] gb\|AAM51349.1\| putative elongation factor P (EF-P) [Arabidopsis thaliana] gb\|AAM64282.1\| putative elongation factor P (EF-P) [Arabidops	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	elongation factor p	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Elongation factor P, C-terminal	IPR015365	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Translation elongation factor P	IPR011768	-	-
Sma3	Translation elongation factor, KOW-like	IPR013185	-	-
Sma3	Translation elongation factor P/YeiP, central	IPR001059	-	-
Sma3	Translation elongation factor P/YeiP, conserved site	IPR013852	-	-
Sma3	Translation protein SH3-like, subgroup	IPR014722	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P273

Fln msg:

Fln protein: MMGLSNTITCSNRSVYRKPYPLSQSSFHVIKISKLQNSWRPTAFPVRFTRILALSTNDIKVGTNIEVDGGPWRVLEFLHVKPGKGAAFVRTKIRNYVNGNTVEKTFRAGASVEEADIVKETKQYTYKDGGQFVFMDMSTYEESRLNESDLGDKKMWLKEGLECEVLSWNGRVIDVEFPISTTYKVVEAEIGVKGDTVQGGSKPVTVETGATVYVPFFVNVGDDIVVDTRTGSYMSRA*

Protein Length: 239

Fln nts: TAGGCACGAGA_-_ATGATGGGATTGTCAAATACCATAACTTGTAGCAATCGCTCCGTGTACAGGAAGCCTTACCCACTAAGCCAAAGCTCATTTCATGTTATAAAAATTAGCAAGTTGCAGAATTCATGGCGTCCTACCGCCTTTCCTGTGCGCTTTACAAGAATATTGGCACTCTCAACCAATGACATCAAAGTTGGGACCAACATTGAAGTCGATGGTGGGCCATGGCGTGTTTTGGAATTTCTGCACGTAAAGCCTGGGAAAGGTGCAGCTTTTGTGAGAACAAAAATACGCAACTATGTAAATGGCAACACTGTTGAGAAAACTTTTCGCGCTGGGGCATCTGTGGAAGAAGCAGACATTGTGAAGGAAACAAAACAGTATACGTACAAAGATGGTGGACAGTTTGTGTTCATGGACATGTCTACTTATGAAGAATCCCGACTAAATGAGTCAGATCTTGGTGACAAGAAAATGTGGCTGAAGGAGGGCTTGGAATGCGAGGTACTTTCCTGGAATGGACGGGTAATTGATGTTGAATTTCCTATTAGTACAACATATAAAGTTGTCGAAGCAGAAATTGGGGTGAAAGGAGACACAGTACAAGGTGGATCAAAGCCAGTAACTGTAGAGACAGGTGCTACAGTATATGTTCCTTTTTTTGTCAATGTTGGAGATGATATTGTTGTAGACACAAGGACCGGGTCTTACATGAGTCGTGCTTAG___GAACATGGTGTTACTCATGATATCTTAGGTTTACATATTGCCAGGAATAGGGTTCCATTTAGCCCGGAAATTATTTAATTTGGTAATGCACACTCAATCATGTGTTTTCATTGTTTGTGGTTCCCATTTAGACAAAATTCTCTACATTGTTCATGGTTTCATGCAACAGCTACCGATTTGGTATCCTTGTTGTGAATCCAAGACAAACAATGAAAATTTGATTTTCCAGCGATCACAACAGGTCTTGTGGTTGACTTTTGACTATTGTT

Fln Alignment:

Contig26198___RMMGLSNTITCSNRSVYRKPYPLSQSSFHVIKISKLQNSWRPTAFPVRFTRILALSTNDIKVGTNIEVDGGPWRVLEFLHVKPGKGAAFVRTKIRNYVNGNTVEKTFRAGASVEEADIVKETKQYTYKDGGQFVFMDMSTYEESRLNESDLGDKKMWLKEGLECEVLSWNGRVIDVEFPISTTYKVVEAEIGVKGDTVQGGSKPVTVETGATVYVPFFVNVGDDIVVDTRTGSYMSR
A9P273_______________RAMGLSNAISCNNCSMYSKTHPLNQSSFHGQKISRLQISWRPTASPVRFTRILALSTNDIKVGTNIEVDGAPWRVMEFLHVKPGKGAAFVRTKMRNYVTGNTVDKTFRAGASVAEADIVKETKQYTYKDGGQFVFMDMSTYEESRLNESDLGDKKMWLKEGLECNVLSWNGRVIDVEFPVSTMYKVVEAEIGVKGDTVQGGSKPVTIDTGAVVYVPFFVNVGDDIIVDTRTGSYMSR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain