SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26141

Length: 2149 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene26141
GCTGTAAAGGCTGCACGAAAAGCCTTTGATGAAGGCCCATGGCCAAAAATGACTGCTTATGAAAGATCGTGTATTATGTACCGGTTTGCTGACTTGCTTGAAAAGCATAATGATGAGATTTCAGCTCTGGAAACATGGGACAATGGGAAGCCTTATGAGCAATCATCCTTGGTCGAAGTGCCAATGGCAATACGGATATTTCGTTACTATGCAGGTTGGGCAGATAAAATACATGGCCTTACAATTCCAGCTGATGGACCTTATCATGTTCAAACTTTACATGAACCTATTGGAGTTGCAGGTCAAATCATTCCTTGGAATTTTCCATTGCTTTTGTTTTCTTGGAAAGTGGCTCCAGCACTAGCTTGTGGGAACACTATTGTATTAAAGAGTGCTGAGCAGACATCATTAACAGCTATTTATGCAGCAAAGCTTTTCCATGAGGCTGGACTGCCTTCAGGAGTCCTGAATATCATTCCAGGATATGGTCGAACTGCAGGAGTTGCAATTGCAAAACACATGGATATTGATAAGCTTGCCTTCACAGGATCAACCGAAACTGGTAAAGCAGTACTAGAGTTAGCTTCTAAGAGCAACCTTAAGCGAGTGACATTGGAACTTGGAGGGAAGTCTCCATTTATCGTATGTGAAGATGCTGATGTTGACCAGGCTGTTGAGCTTGCACACACTGCTCTATTTTTCAACCAGGGTCAATGCTGCTGTGCTGCATCACGAACCTATGTACATGAGAGTATCCATGATGAATTTGTAGAAAAGGCAAAAGCACGGTGTTTAAGTCGTGTTGTTGGTGATCCCTTTAAAAAAGGTGTTGAACAAGGTCCTCAGATTGACCAGATGCAGTTTAACAAAATTATGAGTTATATTAAGGCTGGGAAAGAGAGTGGTGCAAAACTTGTAACAGGGGGAGAGCAAATTGGTACCAAGGGCTTCTACATTATGCCCACAGTTTTCTCAGAAGTTCAAGTTGTTCCATTCGTGATGCTTCAGCCAGCTGTTGTATTGATTTCCACTAAAATGGAAGCATTAGAGATGAGAATTCATTCTCCTCCTTCACATTGAATGGAAATTTATACCTTACAGTTCCATCTTTACATCCTAAAAAGCTTTTCATGATGGTCATGAAATCAAGGTAACAATACTACTGGCAACGATATACTTTGCGTGACCTTGTGTGTCGCTGTATGGTTATGGGAATCACATCCCCAATATCGCCTCCTGCTTGCCCTCAACAGAGACGAATTTTTTGACAGGCCGACTGAGGCTGTGCATTGGTGGGAAGGTGAGGAGATTCTTGGGGGAAGGGATAGCAAGGAAGGAGGAACATGGCTGGCTTCTTCTAGGAATGGACGTCTTGCTTTTGTCACCAATTTTAGAGAGCCTACCTCCAATCCGCTTGCAAAATCCAGAGGAGAGCTTGTCACCGGGTTCTTACGGAGCTCCAAAACTCCAATGGAATTTGCACAGGAAATATCCCAAGAAACTGAGAAATATAATGGCTTCAATTTAATCTTGGTGGACCTCTGCACTTGTAAAATGGCATATGTGACAAATCGTCATGAGGGCACTCTGGGTTATGTTCAGGAAGTTTCTCCCGGCCTTCATGTTCTCTCCAATGGTCAGCTTGATACACCTTGGCCAAAGGTTCAACGTCTGAGGAATATTTTTTGAAGATTTATTGCAAAAGTTTGGTGAAGAGGAAATTCCAGAAATTCAAATAGTTGAAAATGCTATGAAAGATACTGTTAAAGCTGATAAAACGATGCTGCCAAATACAGGTTATGGTCTTGATCACGAGTACAATATAAGCTCAATATTTGTGGATTGGGATAGAGTTGAGGGTCCTTATGGTACAAGGAGTGTGACTGTCCTGTCAGTGAAACACACAAATGAATTGACATACTATGAGCAATGTTTGGAAGATGGGAAGTGGAAAGAGAATCGGATGTCCTATGAAATAGTAACATAAATGGAAAGTGAAAATATTCTAAATATGGCGTAGAAAGAGTTCTTTCAAAAGATGTTACGAGTTTCAATACAAAGTACAAATATGACAAAATTATTACAGTTCGATGTCCAAAGAAATGATAAATCAATAACAAAAACAAATATTTCTTGTGAATATTCTAAC

Ace file of the UniGene sp_v2.0_unigene26141

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aldehyde dehydrogenase 2B7 [Arabidopsis thaliana] sp\|Q8S528.2\|AL2B7_ARATH RecName: Full=Aldehyde dehydrogenase family 2 member B7, mitochondrial; Short=ALDH2b; Flags: Precursor gb\|AAK59643.1\| putative aldehyde dehydrogenase [Arabidopsis thaliana] gb\|AAM44	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	aldehyde dehydrogenase family 2 member mitochondrial-like	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	0.0	89%

Source	InterPros	Term	Type	Identity
Sma3	Protein of unknown function DUF833	IPR008551	-	-
Sma3	Succinic semialdehyde dehydrogenase	IPR010102	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase, C-terminal	IPR016163	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUF6

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 79 aas, putative chimeric sequence, your sequence is shorter than subject: 360 - 544

Fln protein: AVKAARKAFDEGPWPKMTAYERSCIMYRFADLLEKHNDEISALETWDNGKPYEQSSLVEVPMAIRIFRYYAGWADKIHGLTIPADGPYHVQTLHEPIGVAGQIIPWNFPLLLFSWKVAPALACGNTIVLKSAEQTSLTAIYAAKLFHEAGLPSGVLNIIPGYGRTAGVAIAKHMDIDKLAFTGSTETGKAVLELASKSNLKRVTLELGGKSPFIVCEDADVDQAVELAHTALFFNQGQCCCAASRTYVHESIHDEFVEKAKARCLSRVVGDPFKKGVEQGPQIDQMQFNKIMSYIKAGKESGAKLVTGGEQIGTKGFYIMPTVFSEVQVVPFVMLQPAVVLISTKMEALEMRIHSPPSH*

Protein Length: 361

Fln nts: GCTGTAAAGGCTGCACGAAAAGCCTTTGATGAAGGCCCATGGCCAAAAATGACTGCTTATGAAAGATCGTGTATTATGTACCGGTTTGCTGACTTGCTTGAAAAGCATAATGATGAGATTTCAGCTCTGGAAACATGGGACAATGGGAAGCCTTATGAGCAATCATCCTTGGTCGAAGTGCCAATGGCAATACGGATATTTCGTTACTATGCAGGTTGGGCAGATAAAATACATGGCCTTACAATTCCAGCTGATGGACCTTATCATGTTCAAACTTTACATGAACCTATTGGAGTTGCAGGTCAAATCATTCCTTGGAATTTTCCATTGCTTTTGTTTTCTTGGAAAGTGGCTCCAGCACTAGCTTGTGGGAACACTATTGTATTAAAGAGTGCTGAGCAGACATCATTAACAGCTATTTATGCAGCAAAGCTTTTCCATGAGGCTGGACTGCCTTCAGGAGTCCTGAATATCATTCCAGGATATGGTCGAACTGCAGGAGTTGCAATTGCAAAACACATGGATATTGATAAGCTTGCCTTCACAGGATCAACCGAAACTGGTAAAGCAGTACTAGAGTTAGCTTCTAAGAGCAACCTTAAGCGAGTGACATTGGAACTTGGAGGGAAGTCTCCATTTATCGTATGTGAAGATGCTGATGTTGACCAGGCTGTTGAGCTTGCACACACTGCTCTATTTTTCAACCAGGGTCAATGCTGCTGTGCTGCATCACGAACCTATGTACATGAGAGTATCCATGATGAATTTGTAGAAAAGGCAAAAGCACGGTGTTTAAGTCGTGTTGTTGGTGATCCCTTTAAAAAAGGTGTTGAACAAGGTCCTCAGATTGACCAGATGCAGTTTAACAAAATTATGAGTTATATTAAGGCTGGGAAAGAGAGTGGTGCAAAACTTGTAACAGGGGGAGAGCAAATTGGTACCAAGGGCTTCTACATTATGCCCACAGTTTTCTCAGAAGTTCAAGTTGTTCCATTCGTGATGCTTCAGCCAGCTGTTGTATTGATTTCCACTAAAATGGAAGCATTAGAGATGAGAATTCATTCTCCTCCTTCACATTGA___ATGGAAATTTATACCTTACAGTTCCATCTTTACATCCTAAAAAGCTTTTCATGATGGTCATGAAATCAAGGTAACAATACTACTGGCAACGATATACTTTGCGTGACCTTGTGTGTCGCTGTATGGTTATGGGAATCACATCCCCAATATCGCCTCCTGCTTGCCCTCAACAGAGACGAATTTTTTGACAGGCCGACTGAGGCTGTGCATTGGTGGGAAGGTGAGGAGATTCTTGGGGGAAGGGATAGCAAGGAAGGAGGAACATGGCTGGCTTCTTCTAGGAATGGACGTCTTGCTTTTGTCACCAATTTTAGAGAGCCTACCTCCAATCCGCTTGCAAAATCCAGAGGAGAGCTTGTCACCGGGTTCTTACGGAGCTCCAAAACTCCAATGGAATTTGCACAGGAAATATCCCAAGAAACTGAGAAATATAATGGCTTCAATTTAATCTTGGTGGACCTCTGCACTTGTAAAATGGCATATGTGACAAATCGTCATGAGGGCACTCTGGGTTATGTTCAGGAAGTTTCTCCCGGCCTTCATGTTCTCTCCAATGGTCAGCTTGATACACCTTGGCCAAAGGTTCAACGTCTGAGGAATATTTTTTGAAGATTTATTGCAAAAGTTTGGTGAAGAGGAAATTCCAGAAATTCAAATAGTTGAAAATGCTATGAAAGATACTGTTAAAGCTGATAAAACGATGCTGCCAAATACAGGTTATGGTCTTGATCACGAGTACAATATAAGCTCAATATTTGTGGATTGGGATAGAGTTGAGGGTCCTTATGGTACAAGGAGTGTGACTGTCCTGTCAGTGAAACACACAAATGAATTGACATACTATGAGCAATGTTTGGAAGATGGGAAGTGGAAAGAGAATCGGATGTCCTATGAAATAGTAACATAAATGGAAAGTGAAAATATTCTAAATATGGCGTAGAAAGAGTTCTTTCAAAAGATGTTACGAGTTTCAATACAAAGTACAAATATGACAAAATTATTACAGTTCGATGTCCAAAGAAATGATAAATCAATAACAAAAACAAATATTTCTTGTGAATATTCTAAC

Fln Alignment:

Contig26141___AVKAARKAFDEGPWPKMTAYERSCIMYRFADLLEKHNDEISALETWDNGKPYEQSSLVEVPMAIRIFRYYAGWADKIHGLTIPADGPYHVQTLHEPIGVAGQIIPWNFPLLLFSWKVAPALACGNTIVLKSAEQTSLTAIYAAKLFHEAGLPSGVLNIIPGYGRTAGVAIAKHMDIDKLAFTGSTETGKAVLELASKSNLKRVTLELGGKSPFIVCEDADVDQAVELAHTALFFNQGQCCCAASRTYVHESIHDEFVEKAKARCLSRVVGDPFKKGVEQGPQIDQMQFNKIMSYIKAGKESGAKLVTGGEQIGTKGFYIMPTVFSEVQ
A9NUF6_______________AVKAARKAFDVGPWPKMTAYERSCIMLRFADLLEKHNDEIAALETWDNGKPYEQASLVEVPMAVRLFRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNSIVLKSAEQTPLTALYAAKLFHEAGLPPGVLNIVSGFGPTAGAAIARHMDIDKVAFTGSTETGKAVLELASKSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHESIHDEFVEKAKARCLSRVVGDPFRKGVEQGPQIDQEQFNKILRYIKAGKESGAKLVTGGDQIGTKGFYIMPTIFSEVQ

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
1240			20	80	0.995493
1241	20		60	20	0.99255
1243			20	80	0.995493
1246	20	80			0.995493
1250		80		20	0.995493
1251	80		20		0.995493
1252	80		20		0.995493
1254	80			20	0.995493
1256	80			20	0.995493
1257		20	80		0.995493
1261		20	80		0.995493
1263	80			20	0.995493
1515		40		60	1.0
1528		25		75	0.996473
1810		12		87	0.992554
1815		87		12	0.992554
1827	87	12			0.992554
1870	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain