SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene26026

Length: 1221 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene26026

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chaperonin protein n=6 Tax=Poaceae RepID=Q6ASR1_ORYSJ	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	t-complex protein 1 subunit zeta	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	91%
Blast2go	response to zinc ion	GO:0010043	Biological Process	91%
Blast2go	cytoplasm	GO:0005737	Cellular Component	91%
Blast2go	membrane	GO:0016020	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-
Sma3	T-complex protein 1, zeta subunit	IPR012722	-	-
Sma3	Chaperone, tailless complex polypeptide 1	IPR017998	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A7V5

Fln msg: your sequence is shorter than subject: 291 - 342

Fln protein: SEVNAGFFYSNAEQREKMVLAERRQVDEKIQKIINLKKKVCDGTDNNFVVINQKGIDPMSLDFLAREGIVALRRAKRRNMERLVLACGGEAVNSVDDLTPSVLGWAGLVYEHVLGEEKYTFVENVRNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTLEDRAVVLGAGAFEVAASQHLKHTVKKTVQGRAQLGVEAFADALLVVPKTLAENSGLDTQDVLVGLQVEHDKGNIVGLNHHTGEPMDPYLEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKG*

Protein Length: 292

Fln nts: AGTGAAGTAAATGCAGGTTTCTTTTACTCAAATGCAGAGCAGAGGGAGAAAATGGTTTTAGCAGAAAGAAGACAAGTAGATGAGAAAATTCAAAAGATCATTAACCTGAAGAAAAAAGTTTGTGATGGCACTGACAACAATTTTGTTGTGATCAATCAAAAGGGAATAGATCCTATGTCACTCGATTTTCTGGCAAGAGAAGGGATTGTAGCTTTGAGGAGAGCAAAAAGGCGCAATATGGAGAGATTGGTTTTAGCTTGTGGTGGGGAGGCTGTCAATTCTGTTGATGATCTGACTCCTAGTGTTCTTGGATGGGCTGGGCTTGTATATGAGCATGTCCTAGGGGAAGAAAAGTACACCTTTGTGGAAAATGTTAGGAATCCTCACTCGTGTACAATTCTAATAAAAGGACCTAATGATCATACTATTGCCCAAATTAAGGATGCTGTACGCGATGGTCTGAGAGCTGTTAAAAACACACTTGAAGATAGAGCCGTTGTCTTGGGGGCTGGAGCTTTTGAAGTTGCTGCAAGCCAGCATCTCAAACATACCGTCAAGAAGACTGTTCAGGGGCGTGCACAATTAGGAGTTGAAGCCTTTGCTGATGCCCTTTTGGTTGTGCCCAAGACTCTGGCAGAAAATTCTGGACTAGATACTCAAGACGTCTTGGTTGGACTACAGGTGGAGCATGACAAAGGCAACATTGTTGGTTTAAATCATCATACAGGAGAACCGATGGACCCATACTTGGAGGGGATTTTCGACAACTACTCTGTGAAGCGCCAGATTATAAATTCTGGCCCTGTAATTGCATCGCAACTACTTCTCGTGGATGAGGTCATCCGTGCTGGACGGAATATGCGAAAAGGCTGA___ATCTTGTACATTAGCTTTAATAAGCTGATATGGTGTCACTCATCAACACTATGCTGAAGTGGGATAGCGGTTTTGTAGAGTCAAGGACGGTTTGTTTAGTAGTGAATGAGCATGTAATATGAGTTAGTATGAGATTGGTTCCTTGAAGCGTTATGTATCGCAAACATTGCCTACTATTGGCAATTTGGGATTTGGATCAGTGGTGTGCTCGGTGCTTTTGTTTTTGCGTACAAAGCGCCTCGAGTGTCCTGACATTTTGCATTCTTGCATCGATTGAAAAGTGCTTGCTTTGCTTTAGCTTTAGTGTCTGGGAATATTCATACGTGCTTGGCTCTTTTATTTTACATT

Fln Alignment:

Contig26026___SEVNAGFFYSNAEQREKMVLAERRQVDEKIQKIINLKKKVCDGTDNNFVVINQKGIDPMSLDFLAREGIVALRRAKRRNMERLVLACGGEAVNSVDDLTPSVLGWAGLVYEHVLGEEKYTFVENVRNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTLEDRAVVLGAGAFEVAASQHLKHTVKKTVQGRAQLGVEAFADALLVVPKTLAENSGLDTQDVLVGLQVEHDKGNIVGLNHHTGEPMDPYLEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRK
D5A7V5_______________SEVNAGFFYSNAEQREKMVLAERRQVDEKIQKIINLKKKVCDGTDNNFVVINQKGVDPMSLDRLAREGIVALRRAKRRNMERLVLACGGEAVNSVDDLTPDVLGWAGLVYEHVLGEEKYTFVENVRNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTLEDRAVVLGAGAFEVAASQHLKNTVKKTVQGRAQLGVEAFADALLVVPKTLAENSGLDTQDVLVGLQMEHDKGNIVGLNQHTGEPMDPYLEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
813	28		71		1.0
819	85		14		0.993533
822	85		14		0.993533
825	14			85	0.993533
828		85		14	0.993533
1053	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain