SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25899

Length: 1239 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene25899

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycylpeptide N-tetradecanoyltransferase n=1 Tax=Ricinus communis RepID=B9RK90_RICCO	-	-	79%
FL-Next	sp=Glycylpeptide N-tetradecanoyltransferase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	76%
Blast2go	glycylpeptide n-tetradecanoyltransferase 1	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoethanolamine N-methyltransferase.	EC:2.1.1.103	-	0.0	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerophospholipid metabolism	00564		0.0	87%
Blast2go	Glycylpeptide N-tetradecanoyltransferase.	EC:2.3.1.97	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	phosphatidylcholine biosynthetic process	GO:0006656	Biological Process	87%
Blast2go	choline biosynthetic process	GO:0042425	Biological Process	87%
Blast2go	embryonic shoot morphogenesis	GO:0010064	Biological Process	87%
Blast2go	N-terminal protein myristoylation	GO:0006499	Biological Process	87%
Blast2go	pollen tube growth	GO:0009860	Biological Process	87%
Blast2go	pollen development	GO:0009555	Biological Process	87%
Blast2go	pollen tube guidance	GO:0010183	Biological Process	87%
Blast2go	post-embryonic root development	GO:0048528	Biological Process	87%
Blast2go	phosphoethanolamine N-methyltransferase activity	GO:0000234	Molecular Function	87%
Blast2go	glycylpeptide N-tetradecanoyltransferase activity	GO:0004379	Molecular Function	87%
Blast2go	cytosol	GO:0005829	Cellular Component	87%
Blast2go	ribosome	GO:0005840	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Myristoyl-CoA:protein N-myristoyltransferase	IPR000903	-	0.0	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LTR9

Fln msg: your sequence is shorter than subject: 371 - 434

Fln protein: LGTQPVGQFKDIQNHDLPEGPIEDPTPLSEVRQEPYNLPSLYEWCTCDINKDETSIEIYNLLTNNYVEDDENMFRFDYSKEFLRWALRPPGYFKSWHIGVRVKSTRKLVAFITGVPAKIRVRDRSVLMAEINFLCVHKKLRSKRLAPVLIKEVTRRVVLPTPIATCQYWHRSLNPKKLIEVGFSRLGARMTMSRTIKLYRLPETTVTPGFRAMERHDVPAVTRLLHNYLSKFVVAPDFNEDDVEHWLVPTEDVIDSYVVENPDTHEITDFCSFYTLPSSILGNANHSMLKAAYSYYNVSTRTPLLQLMNDVLIVAKKKNYDVFNALDIMQNESFLKDLKFGPGDGQLHYYLYNYRIKDALKPSQLGLVLL*

Protein Length: 372

Fln nts: TTGGGAACACAACCAGTAGGCCAATTCAAGGACATCCAGAATCATGATTTGCCTGAAGGCCCAATCGAGGATCCGACCCCCCTGTCTGAGGTTAGGCAGGAGCCTTATAATCTGCCAAGCCTGTATGAGTGGTGTACTTGTGATATTAACAAGGACGAGACCTCTATAGAGATTTACAATCTCCTGACTAATAACTATGTGGAGGATGATGAGAACATGTTTAGATTTGATTACTCCAAGGAGTTCTTAAGATGGGCTCTCAGGCCTCCTGGTTATTTCAAGAGTTGGCATATTGGTGTTCGGGTTAAGAGCACCAGGAAGCTGGTGGCTTTCATCACTGGGGTCCCTGCCAAGATCAGGGTTCGAGATCGGTCCGTTCTGATGGCAGAGATCAATTTCCTATGTGTCCACAAGAAGCTTCGGTCCAAGAGACTTGCCCCTGTTCTGATCAAGGAGGTTACGAGGAGGGTTGTCCTCCCGACTCCGATTGCCACTTGCCAATATTGGCACAGGTCCTTAAACCCTAAGAAGCTCATCGAGGTTGGATTCTCTAGGCTTGGAGCTCGGATGACTATGAGCAGGACTATCAAATTATATCGGTTGCCAGAGACTACTGTGACTCCTGGTTTCAGGGCAATGGAAAGGCACGATGTCCCTGCAGTCACAAGGCTTCTACACAATTACTTGTCCAAGTTTGTTGTGGCTCCGGATTTCAATGAAGATGATGTGGAGCACTGGCTGGTTCCTACTGAAGATGTGATTGATAGCTATGTGGTCGAAAACCCTGACACTCATGAGATTACAGACTTCTGCAGCTTCTACACTCTGCCCTCCTCTATTCTTGGCAATGCCAACCACTCCATGCTGAAGGCTGCTTACTCCTATTATAACGTTTCAACCCGGACACCTCTGCTACAGTTGATGAATGACGTTCTCATTGTGGCAAAGAAGAAAAATTATGATGTGTTTAATGCTCTGGACATCATGCAGAATGAGTCATTTTTGAAGGACCTGAAGTTTGGGCCTGGGGATGGACAGCTTCATTATTATCTCTACAATTATCGCATCAAAGATGCCCTTAAACCCTCTCAATTAGGGCTGGTTCTTTTATAG___TGACAGGTTCTTTGTTAATCTTGGATGCAAATAATGGCACGTGAAGGAAACAATCTAATTTTGATGTACTTATAGATCTTGTTTGTTTGCTGAATTTATAGTAGTCTCCACGTCTGATAATATTTT

Fln Alignment:

Contig25899___TQPVGQFKDIQNHDLPEGPIEDPTPLSEVRQEPYNLPSLYEWCTCDINKDETSIEIYNLLTNNYVEDDENMFRFDYSKEFLRWALRPPGYFKSWHIGVRVKSTRKLVAFITGVPAKIRVRDRSVLMAEINFLCVHKKLRSKRLAPVLIKEVTRRV--------------VLPTPIATCQYWHRSLNPKKLIEVGFSRLGARMTMSRTIKLYRLPETTVTPGFRAMERHDVPAVTRLLHNYLSKFVVAPDFNEDDVEHWLVPTEDVIDSYVVENPDTHEITDFCSFYTLPSSILGNANHSMLKAAYSYYNVSTRTPLLQLMNDVLIVAKKKNYDVFNALDIMQNESFLKDLKFGPGDGQLHYYLYNYRIKDALKPS
Q9LTR9_______________TQPVGQFKDIGDTSLPEGPIEPATPLSEVKQEPYNLPSVYEWTTCDMNSDDMCSEVYNLLKNNYVEDDENMFRFNYSKEFLRWALRPPGYYQSWHIGVRAKTSKKLVAFISGVPARIRVRDEVVKMAEINFLCVHKKLRSKRLAPVMIKEVTRRVHLENIWQAAYTAGVILPTPITTCQYWHRSLNPKKLIDVGFSRLGARMTMSRTIKLYKLPDAPITPGFRKMEPRDVPAVTRLLRNYLSQFGVATDFDENDVEHWLLPREDVVDSYLVESPETHDVTDFCSFYTLPSTILGNPNYTTLKAAYSYYNVATQTSFLQLMNDALIVSKQKGFDVFNALDVMHNESFLKELKFGPGDGQLHYYLYNYRLKSALKPA

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
566	16		83		0.994512
635		80		20	0.995493
656		75		25	0.996473
717		20		80	0.995493
719	80			20	0.995493
720	80	20			0.995493
726		20		80	0.995493
727		20	80		0.995493
732	80	20			0.995493
743	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain