SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25865

Length: 616 nt

Origin of reads: Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene25865

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative amino acid or GABA permease [Arabidopsis thaliana]	-	-	86%
FL-Next	tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley).	-	-	87%
Blast2go	amino acid transporter	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	L-alanine transport	GO:0015808	Biological Process	87%
Blast2go	lysine transport	GO:0015819	Biological Process	87%
Blast2go	L-glutamate transport	GO:0015813	Biological Process	87%
Blast2go	arginine transport	GO:0015809	Biological Process	87%
Blast2go	L-lysine transmembrane transporter activity	GO:0015189	Molecular Function	87%
Blast2go	arginine transmembrane transporter activity	GO:0015181	Molecular Function	87%
Blast2go	L-alanine transmembrane transporter activity	GO:0015180	Molecular Function	87%
Blast2go	L-glutamate transmembrane transporter activity	GO:0005313	Molecular Function	87%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Amino acid/polyamine transporter I	IPR002293	-	-
Sma3	Amino acid permease subfamily	IPR004756	-	-
Sma3	Amino acid permease, conserved site	IPR004840	-	-
Sma3	Amino acid permease domain	IPR004841	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
218	80		20		0.995493
220			20	80	0.995493
221	20		80		0.995493
223	80	20			0.995493
233		80		20	0.995493
237		20		80	0.995493
303	85	14			0.993533
307			14	85	0.993533
308	85			14	0.993533
309			14	85	0.993533
310	14			85	0.993533
312		14	85		0.993533
317		14		85	0.993533
320		14	85		0.993533
323	85	14			0.993533
324	14		85		0.993533
403	83	16			0.994512
404			16	83	0.994512
405	83			16	0.994512
406		83	16		0.994512
407	16		83		0.994512
413			16	83	0.994512
416	71	14		14	0.984337
419		14		85	0.993533
420		14	71		0.984337
421	14		71	14	0.984337
422		14	85		0.993533
423	14		71	14	0.984337
424		28	71		1.0
425	85	14			0.993533
428	85		14		0.993533
429			14	85	0.993533
430		14		85	0.993533
434	14		85		0.993533
437	85	14			0.993533
468		57		42	1.0
524	16			83	0.994512
536	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain