SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25778

Length: 1087 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene25778

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to SPPA (signal peptide peptidase); protease IV/ serine-type endopeptidase n=1 Tax=Vitis vinifera RepID=UPI000198502A	-	-	62%
FL-Next	sp=DNA-directed RNA polymerase; Vitis vinifera (Grape).	-	-	70%
Blast2go	protease 4-like	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	response to light intensity	GO:0009642	Biological Process	76%
Blast2go	proteolysis	GO:0006508	Biological Process	76%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	76%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Peptidase S14, ClpP	IPR001907	-	-
Sma3	Peptidase S49	IPR002142	-	-
Sma3	Peptidase S49, protease IV	IPR004634	-	-
Sma3	Peptidase S49, SppA	IPR004635	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7SIQ7

Fln msg: your sequence is shorter than subject: 261 - 425

Fln protein: ILRIDSPGGDALASDLMWREIRLLAAEKPVVASMGDVAASGGYYMAMAAGVIVSESLTLTGSIGVVTGKLNLNKLYDRIEFNKEVISRGRFAELDVEQRPFRPDEEDLFAKSAQNAYKLFRDKAAFSRSMSVDSMEAVAQGRVWTGKDAASLGLVDAIGGFSRAVAIAKQKANIPLDRKVSLVELSRSSPSLPELISSGARAIFGLPSLLSLDERLKELYQELSPSGVQARMDSIILQGLGEYQDGQVFLKIIKDYLSSF*

Protein Length: 262

Fln nts: AATTTTACGCATTGACAGCCCTGGTGGTGATGCTCTAGCCTCAGATTTAATGTGGAGGGAAATCAGGTTATTAGCTGCTGAAAAGCCTGTGGTTGCATCCATGGGTGATGTGGCTGCAAGTGGAGGCTATTACATGGCAATGGCAGCAGGAGTCATTGTTTCAGAGAGTCTTACATTGACTGGTTCGATTGGGGTTGTGACAGGAAAATTAAACTTGAACAAGCTGTATGACAGGATTGAATTCAATAAAGAGGTAATCTCAAGAGGCAGATTTGCAGAGTTGGATGTTGAACAGCGCCCATTCAGGCCTGATGAAGAGGATTTATTTGCCAAATCTGCACAAAATGCATATAAACTGTTTCGAGATAAAGCAGCATTCTCTAGGTCTATGAGTGTTGACAGTATGGAGGCTGTGGCTCAAGGTAGGGTGTGGACCGGTAAAGATGCAGCTAGTCTTGGTTTGGTGGATGCAATTGGAGGGTTTTCCAGAGCTGTTGCAATTGCAAAACAAAAGGCAAACATACCACTTGATAGGAAGGTTTCCCTGGTGGAGTTGTCTAGAAGTTCACCATCTTTACCTGAACTTATCAGTAGTGGGGCACGTGCAATATTTGGTCTTCCGTCATTGCTAAGCTTGGACGAAAGACTTAAGGAACTTTATCAGGAGCTTTCTCCATCTGGAGTGCAAGCTCGAATGGATAGTATTATTCTTCAAGGTCTTGGAGAATATCAAGATGGACAGGTGTTCCTGAAGATTATTAAGGATTATCTCAGCTCTTTCTGA___AACCTGAAACTTGCATGTACATATAAAATGGCTTGTAAAGGTAGTTTGTCTTCTGTTAAAGTAAAGGTGATTATGTCCTATGAACTAAAGTCACCATTGTATAGAAACCCAATTCATTTGTGGAGCTAAACTTGTCACTTCAGACAATAGTTCAACTGAATTGGACTGTTAAGGTCTAAATTGCTACAGTGATAAAACATTTAATATCCAATGCCTGTATTTATTCAACTATATCCAGATCTGAATAACAGAATTCAGTTGGGTTGCTGATTGGCAAAGCTTACCCAATTGGAATTTTTAACC

Fln Alignment:

Contig25778___ILRIDSPGGDALASDLMWREIRLLAAEKPVVASMGDVXXXXXXXXXXXXXVIVSESLTLTGSIGVVTGKLNLNKLYDRIEFNKEVISRGRFAELDV-EQRPFRPDEEDLFAKSAQNAYKLFRDKAAFSRSMSVDSMEAVAQGRVWTGKDAASLGLVDAIGGFSRAVAIAKQKANIPLDRKXXXXXXXXXXXXXXXXXXXGARAIFGL-PSLLSLDERLKELYQELS-PSGVQARMDSIILQGLGEYQDGQVFLKIIKDYLSS
D7SIQ7_______________IIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGTIVAENLTLTGSIGVVTGKFNLGTLYEKIGFNKEIISRGRFAELTAAEQRPFRPDEAELFAKSAQNAYKQFRDKAAFSRSMAVDKMEENAQGRVWTGKDAASRGLVDAIGGLSRAVAIAKQKADIPQDRPVTLVELSRPSPTV-------SEILTGIGSSIVGVERTLKELLQDLTFSNGVQARMDGILFQKLEEASDSNPIFTLVKDYLSS

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
301	33	66			0.997452
304			33	66	0.997452
305		66		33	0.997452
469	20		80		0.995493
472			80	20	0.995493
635			85	14	0.993533
636		85	14		0.993533
637			14	85	0.993533
638			14	85	0.993533
644	87	12			0.992554
662	44	55			1.0
944	16		83		0.994512
945	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain