SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25771

Length: 450 nt

Origin of reads: Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene25771
AATGTGTTCCTCCTACCGGTAGTGTTCCGTTTGATGATTTTTGGCAATCCTGTATTGGCACCCTTTTTCTGGTTAAGGGATCATGATTCTCAAGAAGCTGATGGTGCTTCACTGCCCAATTCACAACCCACACAGACATCACCTGTGCACCCTTCCTTTAGTGATCTCAAGGATTCAGATGATGAAGGATTGCATCGGCAGCTTCAAAGTGATGAAGTGGATATTGGGATTAGAGTTCCTGACACCTATGATAGTGAAATGTTTGAATGGACGCAAAGGCCATGCTCCCCGGAGCTCGACTCCAGCCCTATAAGACAACAGGGCCAAAAATTATCAGAGATGGTTGTGTCACCATGCAAAGAATTACAAAATGATAAGGGATTGCTTATTAATGGCCCAAATGAAACTGATCAAGTAAATGATGCTGAATTTGCTGAAGACACTGCGACA

Ace file of the UniGene sp_v2.0_unigene25771 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Protein BREAST CANCER SUSCEPTIBILITY 1 homolog; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%
Blast2go	protein breast cancer susceptibility 1 homolog	-	-	1.27195e-18	60%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	1.27195e-18	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	1.27195e-18	60%
Blast2go	response to gamma radiation	GO:0010332	Biological Process	1.27195e-18	60%
Blast2go	DNA recombination	GO:0006310	Biological Process	1.27195e-18	60%
Blast2go	DNA repair	GO:0006281	Biological Process	1.27195e-18	60%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	1.27195e-18	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8RXD4

Fln msg: Distance to subject end: 611 aas, your sequence is shorter than subject: 150 - 941

Fln protein: NVFLLPVVFRLMIFGNPVLAPFFWLRDHDSQEADGASLPNSQPTQTSPVHPSFSDLKDSDDEGLHRQLQSDEVDIGIRVPDTYDSEMFEWTQRPCSPELDSSPIRQQGQKLSEMVVSPCKELQNDKGLLINGPNETDQVNDAEFAEDTAT

Protein Length: 151

Fln nts: AATGTGTTCCTCCTACCGGTAGTGTTCCGTTTGATGATTTTTGGCAATCCTGTATTGGCACCCTTTTTCTGGTTAAGGGATCATGATTCTCAAGAAGCTGATGGTGCTTCACTGCCCAATTCACAACCCACACAGACATCACCTGTGCACCCTTCCTTTAGTGATCTCAAGGATTCAGATGATGAAGGATTGCATCGGCAGCTTCAAAGTGATGAAGTGGATATTGGGATTAGAGTTCCTGACACCTATGATAGTGAAATGTTTGAATGGACGCAAAGGCCATGCTCCCCGGAGCTCGACTCCAGCCCTATAAGACAACAGGGCCAAAAATTATCAGAGATGGTTGTGTCACCATGCAAAGAATTACAAAATGATAAGGGATTGCTTATTAATGGCCCAAATGAAACTGATCAAGTAAATGATGCTGAATTTGCTGAAGACACTGCGACA

Fln Alignment:

Contig25771___LAPFFWLRDHDSQEADGASLPNSQPTQTSPVH-PSFSDLKDSDDEGLHRQLQSDEVDIGIRVPDTYDSEMFEWTQRPCSPELDSSPIR
Q8RXD4_______________LSPFFWLRDEDDGENSSQRTESDQLLGTTPVNVPSFSDLMDSDHESPSKEDEQQKPNPG----DMFDSEMFEWTQRPCSPEILPSPVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain