SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25733

Length: 1081 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene25733

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein Brevis radix-like 4 [Arabidopsis thaliana] sp\|Q8GZ92.1\|BRXL4_ARATH RecName: Full=Protein Brevis radix-like 4; Short=AtBRXL4 dbj\|BAC41811.1\| unknown protein [Arabidopsis thaliana] gb\|AED92856.1\| protein Brevis radix-like 4 [Arabidopsis thaliana]	-	-	1.0e-39	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	brevis radix-like 3	-	-	0.0	55%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Brevis radix-like domain	IPR013591	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN54

Fln msg: your sequence is shorter than subject: 279 - 342

Fln protein: NLNREEQLQRSIDSEAGSESRTPLEESSSSTATWCIMDASSKGDSLSDRLCTNTPPTGTPIFHTSSGSVETMMDEKDDEETKEWISQVEPGVIITLVSLKGGRNELKRIRFSREIFNHEQAQGWWAENCDKIMELYNVHAHTKDKPAAVSNPPRSEDERDSKIRAESGTDSPVTPPMQNKTLLPRGSQASETSSFRDTDRSDHLQSKDNSSKQGHNREYECVEEDEPGVHVTIHCYPTGSRQIKRVKFRREKFSETQAKLWWEENRVRIHAKYAGPPI*

Protein Length: 280

Fln nts: AACCTTAACCGCGAGGAACAGTTGCAAAGGAGCATAGATTCAGAAGCAGGATCCGAAAGCAGAACACCGCTTGAAGAAAGTTCCAGTTCCACAGCGACCTGGTGCATTATGGATGCTTCTAGTAAAGGCGATTCTCTAAGCGATAGGCTGTGCACGAATACCCCACCAACCGGCACACCGATTTTCCATACCTCCTCTGGATCAGTCGAAACAATGATGGACGAAAAGGACGACGAGGAAACCAAGGAGTGGATATCACAGGTCGAACCTGGCGTCATCATTACTCTAGTTTCTCTCAAGGGAGGACGAAATGAGCTTAAGCGGATCCGATTCAGCCGAGAAATATTCAACCACGAGCAAGCTCAGGGTTGGTGGGCTGAAAATTGTGATAAAATCATGGAGCTTTACAATGTCCATGCGCATACCAAGGACAAGCCTGCTGCGGTTTCGAATCCTCCGAGATCTGAGGACGAGAGAGATTCCAAGATTCGGGCCGAATCCGGAACTGACAGTCCTGTCACGCCACCGATGCAAAACAAGACTCTTCTTCCAAGAGGTTCACAGGCATCAGAAACGAGTTCTTTTCGCGATACTGATCGGTCGGACCACTTGCAGAGTAAAGACAATTCTAGTAAACAAGGGCATAATCGAGAATACGAATGCGTGGAAGAAGATGAACCCGGTGTCCATGTTACCATTCACTGTTACCCTACAGGTTCAAGGCAAATTAAGCGCGTCAAATTCCGCCGAGAGAAGTTCAGTGAGACGCAAGCGAAATTATGGTGGGAAGAAAATCGCGTCAGAATTCATGCGAAATACGCTGGGCCTCCCATTTAA___TGTGTCGATGGATTACTAATAACGTCTCTAGATTGTTTTCAGATTATTTACTGTGCGCCTTTGCTGAAATATAAGTTGAAGTCTCGATCAGGTCAGCCATTGTCATATTATTGAGTATCTTTGCTGAAATCGAAGTTAGTCACTCTGCTTTATAATTTCATTATGAAATTCAATTCCCAGTCAACTTTAGGTGGAACTGGATTATTTATGAAACTATATAAATTCTTGAATCACATATATCTCA

Fln Alignment:

Contig25733___NLNREEQLQRSIDSEAGSESRTPLEESSSSTATWCIMDASSKGDSLSDRLCTNTPPTGTPIFHTSSGSVXXXXXXXXXXXXXXWISQVEPGVIITLVSLKGGRNELKRIRFSREIFNHEQAQGWWAENCDKIMELYNVHAHTKDKPA-AVSNPPRSEDERDSKIRAESGTDSPVTPPMQNKTLLPRGSQASETSSFRDTDRSDHLQSKDNSSKQGHNREYECVEEDEPGVHVTIHCYPTGSRQIKRVKFRREKFSETQAKLWWEENRVRIHAKY
A9NN54_______________NLSREGQLQRCTASEVGSENGTPRGGSSSSTPAWSIVSSSSKGHVLGDRLCANTSRIGTPMLHTSSGPVETTMEEVEEEESKEWISQVEPGVLITLVSVKGGGNELKRIRFSRELFNKWQAQRWWAENYDKVMELYNVHAHAKDDSAVAVPTPPRSEDERDSKMQ-ESGADSPVTPPIQNMSLLPRGLYASRTSSSHYADRSDDFQSSGNSSEQEQEQEQEWVEEDEPGVYVTIRCSPAGSREIRRVRFSREKFSEMQARLWWEENRLRIHEQY

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
620	75		25		0.996473
621	75		25		0.996473
623	75		25		0.996473
750	66	33			0.997452
799			75	25	0.996473
853	80		20		0.995493
958		20		80	0.995493
973	60		40		1.0
1001		33		66	0.997452
1008	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain