SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25599

Length: 1798 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene25599

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pectate lyase [Gossypium hirsutum]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	pectate lyase	-	-	88%

Source	InterPros	Term	Type	Identity
Sma3	Pectate lyase/Amb allergen	IPR002022	-	-
Sma3	AmbAllergen	IPR018082	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWK6

Fln msg:

Fln protein: MSGYRSGLALLVFLCIFCFRSEARKSVGIFEKLTGAVLGRPAVVPETKHALEPATKLVEDPEQVVDMVERSINSSRRELSYLTCGTGNPIDDCWRCDPDWENNRQRLADCAIGFGRNAIGGQNGRFYVVTDPNDDNPVNPRPGTLRHAVIQNEPLWIIFERDMVIQLKEELIMNSYKTIDGRGANVHIANGPCITVQYVKHIIIHGIHIHDCKPAGNAMVRDSPTHYGWRTRSDGDGVSIFGANNIWVDHCSLSSCTDGLIDAIRGSTAITISNNYMSQHDKVMLLGHSDDYTQDVNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPSNAFSKEVTKHEDAPENAWRQWNWRSEGDLMLNGAFFTQSGAASSSSYAKASSLAARPSSLVSSLTTYAGVLQCRAGSRC*

Protein Length: 438

Fln nts: ATGGGGGCAAACGACCTGAGTTCAGCACAAGTTTAGTCATTCCATGCGAACTCGACTGGCTCACAAGATCCCTCGCTGCAGTTATAGATTGCAGGAATTAGCTTAGCAGCATTTCTATCTATGATCTTCTGCCACTTCTTCCCCTCTCAAATACAGAGTCTTCTCTTCCCTATTTATTGTTAGAAGAATCAATGCAATAGAGATCCCGTATTGTGGAAAAGCCAGAATCGTAGTAAATTCCCATTGTTGTAGGTTGCAGACTGTTGAATCATTGGACCCCTTCTGTAACCAAA_-_ATGTCTGGCTATCGAAGTGGACTTGCATTGCTTGTTTTCCTCTGCATCTTTTGCTTTCGATCTGAGGCGAGGAAATCAGTTGGAATTTTCGAAAAATTGACGGGCGCTGTTCTTGGACGGCCTGCGGTGGTGCCTGAGACTAAACATGCGCTAGAACCTGCGACAAAACTTGTGGAGGATCCCGAACAAGTAGTTGATATGGTTGAAAGGAGCATTAACAGCTCGAGAAGGGAGCTAAGTTATTTGACTTGCGGGACGGGGAACCCTATCGATGATTGTTGGCGCTGCGATCCAGATTGGGAAAACAATCGACAGAGGCTTGCAGACTGCGCCATTGGATTCGGTAGGAACGCCATCGGAGGGCAGAACGGCAGATTCTATGTTGTCACAGATCCCAATGACGACAATCCAGTCAATCCCCGGCCAGGCACTCTGCGCCACGCTGTTATTCAAAACGAGCCTCTGTGGATCATCTTTGAGAGAGACATGGTCATCCAGCTCAAAGAAGAGCTTATCATGAACAGCTACAAGACAATCGACGGCAGAGGCGCCAATGTACACATCGCAAACGGCCCTTGCATTACAGTACAGTATGTGAAACACATTATCATTCACGGGATTCACATCCATGACTGCAAGCCTGCAGGAAATGCCATGGTGAGGGATTCCCCGACACATTACGGGTGGAGAACGAGAAGTGATGGAGATGGAGTTTCCATCTTTGGGGCAAACAATATCTGGGTAGACCATTGCTCCTTGTCAAGCTGCACAGATGGGCTCATCGATGCCATCCGAGGGTCCACTGCAATCACCATTTCCAACAACTATATGTCGCAACATGATAAGGTAATGCTTCTGGGCCACAGCGACGATTATACTCAGGACGTTAACATGCAAGTAACGATTGCCTTTAACCATTTTGGGGAAGGGCTAGTGCAACGCATGCCCAGGTGCCGACACGGGTACTTCCATGTGGTGAACAACGATTACACTCACTGGGAAATGTACGCAATCGGTGGAAGTGCAAATCCAACAATCAACAGCCAAGGCAATCGATTCCTCGCACCTAGCAATGCATTCTCCAAGGAGGTGACTAAGCATGAGGACGCACCAGAGAACGCATGGAGGCAGTGGAATTGGAGGTCAGAGGGAGACCTGATGTTGAACGGAGCGTTCTTCACTCAATCGGGAGCGGCCTCATCGTCGAGTTATGCCAAGGCTTCCAGTCTTGCAGCGAGGCCTTCGTCTCTCGTCTCCTCTCTCACAACATATGCCGGCGTTCTGCAATGCAGAGCAGGCTCCCGCTGCTGA___CCCCAACAGCACGGCCACATTCAAATTCGTTGCCTCTCTCCACAAACTTTATTTACTTCCTGTTCTTAACTGTGAGCACTCTTTTATGTGTGAGAGAGCGTACCTTCCAGCCTGCAACCTCGGCCTGCATCAATACGCCCTCTTTGCATCGAGGTTAACGGGCAGGCGCAGAAGTGTTGAAAATATATGTCGTT

Fln Alignment:

Contig25599___MSGYRSGLALLVFLCIFCFRSEARKSVGIFEKLTGAVLGRPAVVPETKHALEPATKLVEDPEQVVDMVERSINSSRRELSYLTCGTGNPIDDCWRCDPDWENNRQRLADCAIGFGRNAIGGQNGRFYXXXXXXXXXXXXXRPGTLRHAVIQNEPLWIIFERDMVIQLKEELIMNSYKTIDGRGANVHIANGPCITVQYVKXXXXXXXXXXDCKPAGNAMVRDSPTHYGWRTRSDGDGVSIFGANNIWVDHCSLSSCTDGLIDAIRGSTAITISNNYMSQHDKVMLLGHSDDYTQDVNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPSNAFSKEVTKHEDAPENAWRQWNWRSEGDLMLNGAFFTQXXXXXXXXXXXXXXXXXRPSSLVSSLTTYAGVLQCRAGSRC
A9NWK6_______________MSGYRTVLALLVLLWIFCIPSEASKTFGILEKLTGAALGRPAVVPETKHAQEPATKHVEDPERVVEMVERSINSSRRELSYLSCGTGNPIDDCWRCDSDWENNRKRLADCAIGFGRNAIGGQNGRIYVVTDPNDYNAVNPRPGTLRHAVIQTEPLWIIFQRDMVIQLKEELIMNSYKTIDGRGANVHIANGPCITVQYVHHIIIHGIHIHDCKPAGNAMVRDSPGHYGWRTVSDGDGVSIFGGSNIWVDHCSLSNCADGLVDAIRGSTAITVSNNYMSHHNKVMLLGHSDDYTQDVNMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPTNPFSKEVTKHEDAPESKWRQWNWRSDGDQMLNGAFFTPSGAGASSSYSKASSLAARPSSLVPSLTTNAGVLTCRSGSRC

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
993		33		66	0.997452
1025	66		33		0.997452
1307			20	80	0.995493
1308	20	80			0.995493
1309			80	20	0.995493
1315	80			20	0.995493
1316			80	20	0.995493
1321	80	20			0.995493
1322	80			20	0.995493
1327	80	20			0.995493
1329	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain