SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25494

Length: 559 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene25494
GCAATTGTTTACCTGCACGAGAAGTGCAAGGACCGCATTATTCACTGCGACATCAAGCCCGAAAATATCCTCCTCGATTCCAATTTCTGCCCGAAGGTGGCCGATTTTGGAATGGCGAAGCTCCTCGGTAGAGAGTATAGTAAGGTTCTGACGACCATTAGAGGAACGAGAGGGTACTTGGCCCCCGAGTGGCTCTCAGGTCGGCCGATCACCGTGAAGGCCGACGTCTACAGCTTCGGAATAACGTTGCTTGAAATAATTGCGGGGCATAGAAACATGGACAAGGTCTCTGAATCCACCGAACTGTATTTTCCAGCTTGGGCTGCAACTCACATCAGCAGAGGAAACGCCATGGAAGTGCTCGACAAGGAATTGTTGAATGATGCAGACCTGGAAGAAGTGAAGAGGGCTGCCATAGTTGCAGGATGGTGTATCCAGGACGACGAAGACGCGAGGCCGTCGATGAGTAAAGTGTTGCAGATATTGGAAGGTGTTGTTGACGTACCTCCTCTTCCCCCGATTCCCCACTCCCTCGATACCTGTGACGACAGTCCAGTCG

Ace file of the UniGene sp_v2.0_unigene25494

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative S-domain receptor-like protein kinase n=1 Tax=Oryza sativa Japonica Group RepID=Q9LE23_ORYSJ	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Phospholipase C, phosphatidylinositol-specific , X domain	IPR000909	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3		IPR001899	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	PAN-1 domain	IPR003014	-	-
Sma3	Long hematopoietin receptor, Gp130 family 2, conserved site	IPR003529	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NM60

Fln msg: Distance to subject end: 21 aas, your sequence is shorter than subject: 186 - 431

Fln protein: AIVYLHEKCKDRIIHCDIKPENILLDSNFCPKVADFGMAKLLGREYSKVLTTIRGTRGYLAPEWLSGRPITVKADVYSFGITLLEIIAGHRNMDKVSESTELYFPAWAATHISRGNAMEVLDKELLNDADLEEVKRAAIVAGWCIQDDEDARPSMSKVLQILEGVVDVPPLPPIPHSLDTCDDSPV

Protein Length: 187

Fln nts: GCAATTGTTTACCTGCACGAGAAGTGCAAGGACCGCATTATTCACTGCGACATCAAGCCCGAAAATATCCTCCTCGATTCCAATTTCTGCCCGAAGGTGGCCGATTTTGGAATGGCGAAGCTCCTCGGTAGAGAGTATAGTAAGGTTCTGACGACCATTAGAGGAACGAGAGGGTACTTGGCCCCCGAGTGGCTCTCAGGTCGGCCGATCACCGTGAAGGCCGACGTCTACAGCTTCGGAATAACGTTGCTTGAAATAATTGCGGGGCATAGAAACATGGACAAGGTCTCTGAATCCACCGAACTGTATTTTCCAGCTTGGGCTGCAACTCACATCAGCAGAGGAAACGCCATGGAAGTGCTCGACAAGGAATTGTTGAATGATGCAGACCTGGAAGAAGTGAAGAGGGCTGCCATAGTTGCAGGATGGTGTATCCAGGACGACGAAGACGCGAGGCCGTCGATGAGTAAAGTGTTGCAGATATTGGAAGGTGTTGTTGACGTACCTCCTCTTCCCCCGATTCCCCACTCCCTCGATACCTGTGACGACAGTCCAGTCG

Fln Alignment:

Contig25494___IVYLHEKCKDRIIHCDIKPENILLDSNFCPKVADFGMAKLLGREY-SKVLTTIRGTRGYLAPEWLSGRPITVKADVYSFGITLLEIIAGHRNMDKVSESTELYFPAWAATHISRGNAMEVLDK--ELLNDADLEEVKRAAIVAGWCIQDDEDARPSMSKVLQILEGVVDV--PP
A9NM60_______________LAYLHEESRLCILHLDVKPQNILVDEYFKAKVSDFGMARCLKRDIESHLVTGVRGTPGYMAPEWLLGAGITSKSDVFSYGMVLLEIISGRRNVDNTRDSDNWYFPSIAINKARQDKMEEIIETGLEMKRPEDLEEAYRLIKTALWCVQSNSGLRPSMGTVVRILEGDLEILDPP

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
330		80		20	0.995493
331			20	80	0.995493
332		80	20		0.995493
333	80		20		0.995493
351		85	14		0.993533
358	85		14		0.993533
361	14		85		0.993533
364		85	14		0.993533
382		14		85	0.993533
392		85	14		0.993533
393		14		85	0.993533
398		14	85		0.993533
404	85		14		0.993533
417		14		85	0.993533
421			14	85	0.993533
433		14		85	0.993533
436		85		14	0.993533
451	14	85			0.993533
532		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain