SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25451

Length: 554 nt

UniGene Fasta

>sp_v2.0_unigene25451
CTTTCCAGGAGACAACAAATCCAGTCTTTCTCAACCGATTTTGATCAGGTTGACAGAGAATTTCACTGGGATAATTATATACTATTTCAAGCATGGGTAGCAACTATAGGGCATGCTTGTTTTCCTGGGTTAGGCAGCCTTCCAATCTGGAATTACAGAGGGGTGATCTCAGTCTTGCTACTGCATATGGGGCCAACCGAGCTACTGTATTACTGTATTCATAGAGCTTTTCACAGAGGTTCCTTGTTTGAAAATTACCATTCTTTTCACCATGCATCCACGAGGCCTGAACCTTCAACAGCTGGGACGAACTCTTTTTTGGAGCAGTTGGTGATGGTCTCATTGATGGCAATCCCCATACTTGGGGTGGGTATGATGGGCGAGGCCTCTATTGGCATGTTCTATCTATACTTCTTAGGGTTTGATTTCATCAAGTTTATGGTTCACTCAAATGTTGAGGTGGTTCCCCTGTGGCTTTTCGTATGTTTCCATTTCTTAAGTACCTTCTAGCCATCCCCTCGTATCATCATGTGCATCACAACCAAACTTGATTC

Ace file of the UniGene sp_v2.0_unigene25451

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FA_hydroxylase domain containing protein	-	-	3.0e-15	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	protein wax2-like	-	-	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Fatty acid hydroxylase	IPR006694	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A835

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 367 aas, your sequence is shorter than subject: 170 - 623

Fln protein: LSRRQQIQSFSTDFDQVDREFHWDNYILFQAWVATIGHACFPGLGSLPIWNYRGVISVLLLHMGPTELLYYCIHRAFHRGSLFENYHSFHHASTRPEPSTAGTNSFLEQLVMVSLMAIPILGVGMMGEASIGMFYLYFLGFDFIKFMVHSNVEVVPLWLFVCFHFLSTF*

Protein Length: 171

Fln nts: CTTTCCAGGAGACAACAAATCCAGTCTTTCTCAACCGATTTTGATCAGGTTGACAGAGAATTTCACTGGGATAATTATATACTATTTCAAGCATGGGTAGCAACTATAGGGCATGCTTGTTTTCCTGGGTTAGGCAGCCTTCCAATCTGGAATTACAGAGGGGTGATCTCAGTCTTGCTACTGCATATGGGGCCAACCGAGCTACTGTATTACTGTATTCATAGAGCTTTTCACAGAGGTTCCTTGTTTGAAAATTACCATTCTTTTCACCATGCATCCACGAGGCCTGAACCTTCAACAGCTGGGACGAACTCTTTTTTGGAGCAGTTGGTGATGGTCTCATTGATGGCAATCCCCATACTTGGGGTGGGTATGATGGGCGAGGCCTCTATTGGCATGTTCTATCTATACTTCTTAGGGTTTGATTTCATCAAGTTTATGGTTCACTCAAATGTTGAGGTGGTTCCCCTGTGGCTTTTCGTATGTTTCCATTTCTTAAGTACCTTCTAGCCATCCCCTCGTATCATCATGTGCATCACAACCAAACTTGATTC

Fln Alignment:

Contig25451___LSRRQQIQSFSTDFDQVDREFHWDNYILFQAWVATIGHACFPGLGSLPIWNYRGVISVLLLHMGPTELLYYCIHRAFHRGSLFENYHSFHHASTRPEPSTAGTNSFLEQLVMVSLMAIPILGVGMMGEASIGMFYLYFLGFDFIKFMVHSNVEVVPLWLFVC
D5A835_______________LSHRYKICKKGAEFDQMDREWDWDNFLLLQAFMATAAHHFLPFFRDMPAWNAGGLICLAILRMGPAEVLYYWAHRAFHKDFLFQRYHSLHHAAIVLQPQTAGTATFLEHIGLTIIMAVPMVGASWMGGASMGMIYIYCLLFDFLRYMGHSNVEIVPETIFRC

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain