SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25448

Length: 873 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene25448 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin-binding protein ABP19a precursor, putative (EC:1.15.1.1)	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	germin-like protein	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	Cupin 1	IPR006045	-	-
Sma3	Germin	IPR001929	-	-
Sma3	Germin, manganese binding site	IPR019780	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
262	88		11		0.923564
351		11		88	0.923564
666	80	20			0.995493
668	80			20	0.995493
669	80			20	0.995493
682	14			85	0.993533
683	85	14			0.993533
685			85	14	0.993533
686			85	14	0.993533
721		16		83	0.994512
729	83	16			0.994512
731		16	83		0.994512
733		83		16	0.994512
780	66			33	0.997452
786	66	33			0.997452
787			66	33	0.997452
788	66	33			0.997452
789			66	33	0.997452
790		33	66		0.997452
791	66			33	0.997452
797		33		66	0.997452
801	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain