SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25420

Length: 1406 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene25420 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aminotran_5 domain containing protein	-	-	5.0e-17	24%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	isopenicillin n epimerase-like isoform 1	-	-	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	3-hydroxyacyl-CoA dehydrogenase, conserved site	IPR006180	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR57

Fln msg: your sequence is shorter than subject: 379 - 477

Fln protein: NSLIVLFWAFTEGLLQSRKTIAELINAAHVDEVSLVDNATTAAAIVLQQVSWAFRENSFQKGDVILMLHYAYGAVRKAIQAYAGRAGACIIEVELPFPVRSKEEIIENFRAAVDRGKRDGRKIRLAVIDHVSSMPSVLVPVKELIAVCRDEGVDQVFVDGAHAIGNVDIDMQEIGADFYTSNLYKWFFCPPSAAFLYCRRMFHRIMHHPVVSHEFGNGLPVESAWVGTRDYSAQLCVPSALEFTKKFEGGINALRQKNHEKVVAMGEMLAGAWGTELGTSPELCSSMAMVALPNCLEVSSDQDALNLRSRLRKEFTVEVPIYCRAPKTYLHSNRGPSFKAYARISHQIYNTLDDYLNLKSAILQIVAEVSKAKENVCS*

Protein Length: 380

Fln nts: CAACAGCCTGATAGTTTTATTTTGGGCCTTTACAGAGGGGCTATTGCAATCTCGCAAGACTATCGCCGAGTTGATCAATGCTGCACATGTTGACGAAGTTTCCCTCGTGGACAATGCCACCACTGCAGCGGCAATTGTACTCCAACAGGTTTCTTGGGCATTCAGGGAGAATAGTTTTCAGAAGGGTGATGTCATACTGATGCTTCATTATGCCTATGGAGCTGTGCGGAAGGCAATCCAGGCTTATGCAGGCCGGGCTGGAGCGTGCATCATTGAGGTTGAATTGCCATTCCCGGTGCGATCAAAAGAAGAAATCATAGAGAATTTCAGGGCAGCAGTGGACCGTGGCAAACGAGATGGCCGTAAAATCAGATTGGCAGTCATAGACCATGTTAGTTCAATGCCCTCTGTTCTAGTCCCTGTAAAAGAGCTGATCGCGGTATGCAGAGATGAAGGGGTAGATCAAGTATTTGTAGATGGCGCTCATGCTATTGGGAATGTAGATATTGATATGCAAGAGATTGGTGCTGATTTCTATACCAGCAACCTTTACAAATGGTTTTTCTGCCCTCCCTCTGCGGCATTTCTTTATTGCCGACGCATGTTCCATCGTATTATGCATCACCCAGTTGTTTCTCATGAATTTGGAAATGGATTACCGGTAGAGTCTGCTTGGGTTGGTACTAGAGACTACAGTGCGCAGCTTTGTGTGCCTTCTGCTTTGGAGTTCACTAAAAAATTCGAGGGTGGCATTAATGCTCTCAGGCAAAAGAATCATGAGAAGGTAGTTGCTATGGGGGAAATGCTAGCTGGGGCCTGGGGAACCGAGTTGGGGACATCTCCAGAATTATGCTCATCTATGGCGATGGTTGCTTTACCAAATTGTTTGGAGGTTTCATCAGATCAGGACGCCTTAAACTTAAGGTCTCGTCTAAGGAAGGAGTTTACTGTAGAGGTTCCAATTTATTGCAGGGCACCAAAGACATATTTGCATTCAAATAGAGGACCGAGTTTCAAAGCTTATGCAAGAATCTCTCATCAAATTTACAATACTTTGGATGACTATTTGAATTTGAAATCTGCTATACTTCAGATTGTAGCAGAGGTTTCTAAAGCAAAGGAAAATGTTTGCTCGTAA___AAGCAGTAAGTTCAGTTAGTCTGAAAATGGATAGGCTATTTTAAAAGTTGTTTCCATTGCACTCTCTGTACATGGTGACGGAGCATTCAGTAGTAAAGAGAGGAGGGTAAAACAACCAATGAATGGGTTTTACAGATGATTAATTAAGAGACTGTAAATATGCAAATGGATGCTATTGCTTCAACTTTTGCATTTACAACAAAGATGTCTTAATGGGCTTTAAAGATGATTAATTAAGAGAATGTAAATATGCCAATGGATGATATTG

Fln Alignment:

Contig25420___FWAFTEGLLQSRKTIAELINAAHVDEVSLVDNATTAAAIVLQQVSWAFRENSFQKGDVILMLHYAYGAVRKAIQAYAGRAGACIIEVELPFPVRSKEEIIENFRAAVDRGKRDGRKIRLAVIDHVSSMPSVLVPVKELIAVCRDEGVDQVFVDGAHAIGNVDIDMQEIGADFYTSNLYKWFFCPPSAAFLYCRRMFHRIMHHPVVSHEFGNGLPVESAWVGTRDYSAQLCVPSALEFTKKFEGGINALRQKNHEKVVAMGEMLAGAWGTELGTSPELCSSMAMVALPNCLEVSSDQDALNLRSRLRKEFTVEVPIYCRAP--KTYLHSNRGP--SFKAYARISHQIYNTLDDYLNLKSAILQIVAEVS
B8LR57_______________FGSLRKGLTQSRQMISEMVNAAHVEEISLVDNVTTAVAIVMQQVAWGFMEGKFEKGDAVLMLHYAYGAVKKAIQAYAVRAGARVIEVHLPFPVSSKEEIIGKFRKALEQGKTQSGRIRLAVLDHVTSMPSVVLPIKELIRICREEGVDQVFVDGAHAIGNLDIDMQDISADFYTSNLHKWFFCPPTVAFLYCRRSLLPNLHHPVVSSEYGNGLAIESAWIGNRDYSPQLSVPAALEFVKQFEGGIEGIRKKNHDSVVLRGEMLAKAWDTHLGAPPELCSAMAMVGLPDSLKVGSEKDAMDLRTRLRKEFGVEVPIYHRPPIAKTDFGLTDSPKSAFSAYARISHQIYNTVDDYQKFRDAINQLVLEAS

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
961			33	66	0.997452
965	33	66			0.997452
1192	50		50		1.0
1262	28	71			1.0
1263	28			71	1.0
1265			28	71	1.0
1267		28	71		1.0
1268	28		71		1.0
1269	71	28			1.0
1274	71		28		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain