SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25309

Length: 1392 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene25309

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG1272 Predicted membrane protein, hemolysin III homolog	-	-	2.0e-19	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	adipor-like receptor cg5315-like	-	-	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase	IPR003386	-	-
Sma3	Hly-III-related	IPR004254	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	DNA glycosylase/AP lyase, catalytic domain	IPR012319	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	DNA glycosylase/AP lyase, H2TH DNA-binding	IPR015886	-	-
Sma3	Hexapeptide transferase, conserved site	IPR018357	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NP50

Fln msg: Distance to subject end: 51 aas, your sequence is shorter than subject: 305 - 355

Fln protein: MGVRVMARRTNLAGEEAKADCMTVENTDKMATAKWMWKKVKQEYRLVHFDALPDYLKDNEYILNYYRAEWPLKQALWSIFSWHNETLNVWTHLAGFLLFLALTISSALELMGITEFSSLFPSSLQETLQGANASEHYTLMGLVKHDIQKMMQPNLPKRATRWPFFVFLGGSMFCLFTSSFSHLLSCHSKRLNLFLWRLDYTGISVMIATSFFPPIYYVFQCTPIWQFIYLTSISTMGVFTVLVLMIPSFSSAKFRSFRALLFLAMGFSGVIPAIHAIASNWHEPHCFVTMAYELAMAFFYALGTF

Protein Length: 306

Fln nts: CGTGTTCCAGTTAACTATCTAATTATGTTGCTTGGCCCGGCATTTTAAACGATGGACAGTGCGTGCAAGAAACCAAGAAGGTTGTTCAACGAAGCAGCAGAACTGGTGAAGAAAAAGGCGAGAAAACTGTGATGAGTGGGGGGTGATTTTGGTGGAAAAGCAGCTTTGTCGGAGGCCAGAAATGACCGGAACTTGATGGGAAAAGGAGAAAGGTAGATGATTTCTGCTGATTTGAATGAGGAAGGGAATTGGGACTGTGGAAATGTGAATTAGGTGCAGAGCATTTTCCATTGGAGAATTGAATGTTCGACGATTCCTGTAGGTTTGGGGAGAATCGGGTTGATGAACAAGGTTTTTAATGCATCAAAATTATTTTAGTTATTGAGCATTTTCTGGGTGGTTGGGATTGAGCATTGCTGGATAATATTATTATTTAGGAGCATAATACAGGGGAAGAATTGAGTAGTTTTCTGAT_-_ATGGGGGTCAGGGTGATGGCAAGGAGGACTAATTTGGCTGGTGAAGAGGCCAAGGCTGATTGTATGACAGTTGAGAATACTGATAAAATGGCTACAGCCAAATGGATGTGGAAGAAAGTGAAGCAAGAGTACCGTTTGGTTCACTTTGATGCACTGCCAGATTACTTGAAGGACAACGAATATATTTTGAACTATTACAGGGCGGAGTGGCCATTGAAGCAGGCTCTGTGGAGCATTTTCTCATGGCACAACGAGACCCTCAACGTTTGGACGCATTTGGCAGGGTTCCTCCTTTTCTTAGCTTTGACCATTTCAAGTGCATTGGAGTTAATGGGAATTACAGAATTTTCTTCGCTTTTCCCCAGTTCCTTGCAGGAAACTTTACAGGGAGCCAATGCCTCAGAGCACTATACGCTGATGGGTCTTGTGAAGCATGATATACAAAAGATGATGCAACCCAATTTGCCCAAGCGAGCAACTAGATGGCCATTTTTTGTGTTTCTAGGAGGCTCAATGTTTTGCCTCTTTACAAGCAGCTTTAGTCATCTACTCAGCTGCCACTCTAAGCGACTCAACTTATTCCTCTGGCGGCTTGATTATACTGGTATTTCTGTCATGATTGCAACATCATTCTTTCCCCCTATATACTATGTGTTTCAGTGCACTCCAATATGGCAATTTATATACTTAACAAGCATATCCACCATGGGAGTTTTCACGGTCCTAGTGTTAATGATTCCTTCTTTCTCAAGTGCAAAGTTCCGGTCCTTTCGAGCATTGCTTTTCCTGGCCATGGGTTTTTCAGGTGTAATTCCTGCTATTCATGCAATTGCCTCAAATTGGCATGAGCCTCATTGCTTTGTTACCATGGCCTATGAGCTTGCTATGGCATTTTTCTATGCTCTGGGGACTTTCTT

Fln Alignment:

Contig25309___KQEYRLVHFDALPDYLKDNEYILNYYRAEWPLKQALWSIFSWHNETLNVWTHLAGFLLFLALTISSALELMGIT--------------------------------EFSSLFPSSLQETLQG----ANASEHYTLMGLVKHDIQKMMQPNLPKRATRWPFFVFLGGSMFCLFTSSFSHLLSCHSKRLNLFLWRLDYTGISVMIATSFFPPIYYVFQCTPIWQFIYLTSISTMGVFTVLVLMIPXXXXXXXXXXXXLLFLAMGFSGVIPAIHAIASNWHEPHCFVTMAYELAMAFFYALG
A9NP50_______________KDERRMVDFSALPDYMRDNEYILRHYRAECPLKHTLLSIFTIHNETLNVWTHLAGFVLFLCLTIYTATKLPNVADLPVPNKANLYRLQNEIRAWPMYLPNMAELQAELRTSLPNWVGNCIPGNFSYSNQTEHCILQ-TIKEDVTNMVFPHSQRPITRWPFLVFLGAATYCLFASATFHLLSCHSKRLYYIMLRLDYSGIVALIAASFYPPVYYSFMCAPFFRKLYLTAITLLGIATVFVSLLPAFQNPEFRTLRATLFSGMGVWGVAPVVHKLILHKGEPEALHTAAYEIGMGCFYVLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain