SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25236

Length: 3129 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene25236
TTGGCCTTCTCTCAAGAGAAATCCATCTATGAGGCTGTCGAAGGTGCATTCATTCAATTACATAAAGAAGAACTCCATGGAAACTGCAGCCAATTTGATAAACATCACAATAGATGCTAGCATTGGAGATCTTGCAGCCTTGGAACATATAATCACTGCATTGGTCACCAAAGGAGACATTACTTCTGGAACGATATCTGCTCTTTGGGATTTTTTTACCTTCAATGTCAATGGAGTAACACCAGAGCAAAGCCGTGGAGCTTTATCAGTGCTATGCATGGCTGCAAAGTCTTCCCCAAAGGTCCTCAGTTCACGTTTGTTAAATATTATTGATATTGGATTTGGTCGTTGGGCAAAGGAGGAACCCTTACTTGCAAGGACAGCTTGTATTGCTCTTCAACGACTCTCAGTAGAAGACCGAGACAGTCTTTTCTCTGTTAATCGCCGAGTTTTTAATGTCTTACAAAGTTTGATTATTGGTCCGGGGCTTCCAGAACAAAGCTGGTATGCTGCTTCTGAGCAGGCCATTAATGCTATCTATGCGCTTCATCCCATGCCAGAAATGTTTCTGTCTGATGTCATAAGAAAATTTCATGGCAGTGTTTTTGGGCAAAATGAAGCACTAGAACAACTGGTTTCACATGTTGAAAAAGAGGAAGATGCGGCATCTCTTCTCAATGACCCTCTATCTGTTCATGTTACAAAGCTCAGTAGATACATGTTTGTTGTGAGTCATGTAGCCATGAAACACTTGGTTTATATAGAATCATGTGTACGGAAGGTTCGAAAGCAGAAAGCGGACAAAGAAAGAGCAGCTGCCGAGTCACAGGCTGCGAAACTTGATGACATTGATGCCACGCAATCTTCTGACAAAGCATCAGAGGAGAACAATATCAATGCTGAGTTGGGCGTTTCTGCATCCGAAGATGCAAGGCTTGATTTACTTGCTGAGAAAGCCGAGAAGGAAATCGTTTCGGGAAGACAAAATCAAAAATTTATAATTGGAGTATGTGCACCTGTTATTGCAAAGCTCTGTAGAAACTTTACGCTGCTGCAACAGTTTCCAGGACTGCAGGCATCTGCTATGCTGGCTCTTTGCAAGCTAATGGTTGTTGATGCAGAATTCTGTGATGCAAATCTGCAGCTTCTCTTCACAGTGGCCCAAAATGCTGTCTCAGAATCTGTTCGCTCAAATTGTACCATAGCTCTGGGAGATCTGGCAGTGCGTTTTCCTAATCTTCTGGATCCTTGGACTGAGAATATGTATGCACGCCTTAATGATCAGGCTTTATCCGTGAGAAAAAATGCAGTGCTAGTTTTGTCACACCTCATATTAAATGACATGATGAAGGTCAAAGGTTACATAAGTGAGATGGCTCTTCATCTAGAGGATGAAGACTTGCGGATCTCTAATCTTGTGAAGCTCTTTTTCCATGAATTGTCAAAGAAGGAAACAACCCTATCTATAACCTTTTGCCTGATATTCTAAGTCGACTGTCTAGACAAAACATATCAAAGGAGATGTTCTGTAATATTATGCAGGTCCTGATTGGTTCTATCAAGAAGGACAAACAAATGGAAGGGCTTATCGAGAAGCTCTGTCATCGATTTTCTGGAATCACAGATAAAAAGCAATGGGTTGACATTGCTTATTGCCTTTCTCAACTGACCTACACCGAAAAAGGATATAAGAAACTAGCAGACTTGTTCAAAAGCTATGAACACGCCTTATCTGAGGATGCTGTTATTGAGTACTTCAAAAGTATAACTAACAAGGCAAAAAAATTTGCAAAGCCTGAACTTAAGTCTTCTGTTGAAGACTTTGAAGAGAAGCTTATCAAGTGCCATGAGGAGAGAAAGGAGCAAGAAAGAACTATGCAAAATGCCATGGCACATCAGCAGAAAGTTGCTGGTCCAATGGAGCCAGGCCACTCTAATCTAGAGGAAACTAGCTGTGTAACAGAATGTGAAGCCCAGGAAGAAGGGTTTGTCCAGGAGGATAAAGTTGATGAGAGCAGACCACAGGAAAGCACAAGAGATGGTGTTGGTGATGTCGAAACTGACAATTTGGTGGCCTGCAAGTCAGCAGATGTTTCTGAGTCCAGAAACAGAGAAGGTGAAAGCAAGATGAATACTGATACTTCTCCAATTGCAGCTAAAAGCTGTAGAAAGGGTAGATCTAGAGAAAAGTTGAAAAAGGGCCTCAAGTTAGAGGTGCTCATTAACACAGACGAAGATAATTCTCATGCTATCGATTCACAGATGTCTCCAGCTAGTGTTCGACCTGAGACAGTGAATCATGATGAGAACTTAAGCAGTACAATTTCATCTCAAGACACACGAGGTGAGGTTGAGTCGGATCCTAGAGGCATAATACATGACCCCGCAGATAGATCTGAAATTACACCTTTACATTCTGAGTCGGTTGAAATAGTTGGCAAAGGAATGTCTCGCCGTAAGAAGCCAACATCTCTGAAGGTTGTAACCGAAGAGCCAGAAGGAACAGTAATAGATGAGGAGAAAGAAAATAAGAGCGGGCAAGTTCCTCAAACGCCTTCAACAAGGAGTGTTCGCAGGACACGACAGAAAGATAAGTGCCAGGTTCCTCCTCCTTCTAATCGGAGTTTGCGCAAACGATGATATCTGGTTTAAGTCGGAGGCCGAACATATGAATACCTTACGATTTGTAATTTAAAAGCTTGTGTGCTATGATGTTGTAAATGATTTAGTCTGCAGATGGATTATCTGCCTGTACTTGACAACTTACGGTGACATGTTGATTCAGATTAGGTAAATGCCTTAGCGCAACTAATGACATGGAAGACTGCTGTAGCTAACATACCATATGGAGGAACAAAGGGTGGTATTGGTTGCGACCTACCAACAATGATTCTCAAATTAATTTCCTCATTGGCTTCCCCTCCCCTCACAAGAATTTATTTCATGCCATTTTAAAAAAGTCCGAAGAAATTGAAGTCCTATGCCATGTATCTTGAAGTCCTATGCCATGTATCTTGTGGGTGCAAGGATTACCATTGTTATGAGACAGTTATGTTAGTATAACTTTCTTCTTACATTTAACCTCTTCTCATTATTTAGAAGATATATAAAAACTCAAAATTTGATTGA

Ace file of the UniGene sp_v2.0_unigene25236

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Condensin complex subunit 1 n=1 Tax=Populus trichocarpa RepID=B9H949_POPTR	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	condensin complex subunit 1	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Glucagon/GIP/secretin/VIP	IPR000532	-	-
Sma3	Glutamate/phenylalanine/leucine/valine dehydrogenase	IPR006095	-	-
Sma3	Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal	IPR006096	-	-
Sma3	Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain	IPR006097	-	-
Sma3	Condensin complex, subunit 1	IPR007673	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Glutamate dehydrogenase	IPR014362	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXM5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 219 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 61 - 411

Fln protein: HVDSD*VNALAQLMTWKTAVANIPYGGTKGGIGCDLPTMILKLISSLASPPLTRIYFMPF*

Protein Length: 62

Fln nts: TTGGCCTTCTCTCAAGAGAAATCCATCTATGAGGCTGTCGAAGGTGCATTCATTCAATTACATAAAGAAGAACTCCATGGAAACTGCAGCCAATTTGATAAACATCACAATAGATGCTAGCATTGGAGATCTTGCAGCCTTGGAACATATAATCACTGCATTGGTCACCAAAGGAGACATTACTTCTGGAACGATATCTGCTCTTTGGGATTTTTTTACCTTCAATGTCAATGGAGTAACACCAGAGCAAAGCCGTGGAGCTTTATCAGTGCTATGCATGGCTGCAAAGTCTTCCCCAAAGGTCCTCAGTTCACGTTTGTTAAATATTATTGATATTGGATTTGGTCGTTGGGCAAAGGAGGAACCCTTACTTGCAAGGACAGCTTGTATTGCTCTTCAACGACTCTCAGTAGAAGACCGAGACAGTCTTTTCTCTGTTAATCGCCGAGTTTTTAATGTCTTACAAAGTTTGATTATTGGTCCGGGGCTTCCAGAACAAAGCTGGTATGCTGCTTCTGAGCAGGCCATTAATGCTATCTATGCGCTTCATCCCATGCCAGAAATGTTTCTGTCTGATGTCATAAGAAAATTTCATGGCAGTGTTTTTGGGCAAAATGAAGCACTAGAACAACTGGTTTCACATGTTGAAAAAGAGGAAGATGCGGCATCTCTTCTCAATGACCCTCTATCTGTTCATGTTACAAAGCTCAGTAGATACATGTTTGTTGTGAGTCATGTAGCCATGAAACACTTGGTTTATATAGAATCATGTGTACGGAAGGTTCGAAAGCAGAAAGCGGACAAAGAAAGAGCAGCTGCCGAGTCACAGGCTGCGAAACTTGATGACATTGATGCCACGCAATCTTCTGACAAAGCATCAGAGGAGAACAATATCAATGCTGAGTTGGGCGTTTCTGCATCCGAAGATGCAAGGCTTGATTTACTTGCTGAGAAAGCCGAGAAGGAAATCGTTTCGGGAAGACAAAATCAAAAATTTATAATTGGAGTATGTGCACCTGTTATTGCAAAGCTCTGTAGAAACTTTACGCTGCTGCAACAGTTTCCAGGACTGCAGGCATCTGCTATGCTGGCTCTTTGCAAGCTAATGGTTGTTGATGCAGAATTCTGTGATGCAAATCTGCAGCTTCTCTTCACAGTGGCCCAAAATGCTGTCTCAGAATCTGTTCGCTCAAATTGTACCATAGCTCTGGGAGATCTGGCAGTGCGTTTTCCTAATCTTCTGGATCCTTGGACTGAGAATATGTATGCACGCCTTAATGATCAGGCTTTATCCGTGAGAAAAAATGCAGTGCTAGTTTTGTCACACCTCATATTAAATGACATGATGAAGGTCAAAGGTTACATAAGTGAGATGGCTCTTCATCTAGAGGATGAAGACTTGCGGATCTCTAATCTTGTGAAGCTCTTTTTCCATGAATTGTCAAAGAAGGAAACAACCCTATCTATAACCTTTTGCCTGATATTCTAAGTCGACTGTCTAGACAAAACATATCAAAGGAGATGTTCTGTAATATTATGCAGGTCCTGATTGGTTCTATCAAGAAGGACAAACAAATGGAAGGGCTTATCGAGAAGCTCTGTCATCGATTTTCTGGAATCACAGATAAAAAGCAATGGGTTGACATTGCTTATTGCCTTTCTCAACTGACCTACACCGAAAAAGGATATAAGAAACTAGCAGACTTGTTCAAAAGCTATGAACACGCCTTATCTGAGGATGCTGTTATTGAGTACTTCAAAAGTATAACTAACAAGGCAAAAAAATTTGCAAAGCCTGAACTTAAGTCTTCTGTTGAAGACTTTGAAGAGAAGCTTATCAAGTGCCATGAGGAGAGAAAGGAGCAAGAAAGAACTATGCAAAATGCCATGGCACATCAGCAGAAAGTTGCTGGTCCAATGGAGCCAGGCCACTCTAATCTAGAGGAAACTAGCTGTGTAACAGAATGTGAAGCCCAGGAAGAAGGGTTTGTCCAGGAGGATAAAGTTGATGAGAGCAGACCACAGGAAAGCACAAGAGATGGTGTTGGTGATGTCGAAACTGACAATTTGGTGGCCTGCAAGTCAGCAGATGTTTCTGAGTCCAGAAACAGAGAAGGTGAAAGCAAGATGAATACTGATACTTCTCCAATTGCAGCTAAAAGCTGTAGAAAGGGTAGATCTAGAGAAAAGTTGAAAAAGGGCCTCAAGTTAGAGGTGCTCATTAACACAGACGAAGATAATTCTCATGCTATCGATTCACAGATGTCTCCAGCTAGTGTTCGACCTGAGACAGTGAATCATGATGAGAACTTAAGCAGTACAATTTCATCTCAAGACACACGAGGTGAGGTTGAGTCGGATCCTAGAGGCATAATACATGACCCCGCAGATAGATCTGAAATTACACCTTTACATTCTGAGTCGGTTGAAATAGTTGGCAAAGGAATGTCTCGCCGTAAGAAGCCAACATCTCTGAAGGTTGTAACCGAAGAGCCAGAAGGAACAGTAATAGATGAGGAGAAAGAAAATAAGAGCGGGCAAGTTCCTCAAACGCCTTCAACAAGGAGTGTTCGCAGGACACGACAGAAAGATAAGTGCCAGGTTCCTCCTCCTTCTAATCGGAGTTTGCGCAAACGATGATATCTGGTTTAAGTCGGAGGCCGAACATATGAATACCTTACGATTTGTAATTTAAAAGCTTGTGTGCTATGATGTTGTAAATGATTTAGTCTGCAGATGGATTATCTGCCTGTACTTGACAACTTACGGTGAC_-_ATGTTGATTCAGATTAGGTAAATGCCTTAGCGCAACTAATGACATGGAAGACTGCTGTAGCTAACATACCATATGGAGGAACAAAGGGTGGTATTGGTTGCGACCTACCAACAATGATTCTCAAATTAATTTCCTCATTGGCTTCCCCTCCCCTCACAAGAATTTATTTCATGCCATTTTAAAAAAGTCCGAAGAAATTGAAGTCCTATGCCATGTATCTTGAAGTCCTATGCCATGTATCTTGTGGGTGCAAGGATTACCATTGTTATGAGACAGTTATGTTAGTATAACTTTCTTCTTACATTTAACCTCTTCTCATTATTTAGAAGATATATAAAAACTCAAAATTTGATTGA

Fln Alignment:

Contig25236___PVLDNLR*H--VDSD*VNALAQLMTWKTAVANIPYGGTKGGIGCD
A9NXM5_______________PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCD

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
744			87	12	0.992554
745		87	12		0.992554
746		87	12		0.992554
747	87		12		0.992554
863	28		71		1.0
1299		66		33	0.997452
3082	20	80			0.995493
3083	20			80	0.995493
3084		20		80	0.995493
3085	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain