SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25092

Length: 1076 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene25092

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb\|AAK50098.1\|AF372960_1 AT3g15470/MJK13_13 [Arabidopsis thaliana] gb\|AAF35413.1\| unknown protein [Arabidopsis thaliana] dbj\|BAB02376.1\| WD-40 repeat protein-like [Arabidopsis thaliana] gb\|A	-	-	2.0e-21	30%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	33%
Blast2go	transducin wd40 domain-containing protein	-	-	5.96827e-27	63%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6H267

Fln msg: Distance to subject end: 563 aas, your sequence is shorter than subject: 358 - 880

Fln protein: STSGSDTEEDGDYLNAVNKCQKSNTVRNGCTLPVAAAASLASKYEVWKGEPGSVRERRQRLLRELGLSDDRELQREPPANFRRQEISEIQPDTQCSTSGSHTFAKQRGFHGDANLRTKQGPPVDMFRSISCDELSRRKPVESAWSIARSRSDGANPAEVWRKEGAKPPLGGGVRASAIVAMETAAKDLLQSGNSKHLKDEMDLGHGKYNHLSSGGDQVSNLGSRVDRNDESNSDSVQVFFRSSDLGLGDLTVQLSREAEQARRDGIGDISHTDSSRGSFCKIKNLDNGKEFVVNEVGEDGMWNKLRDVETGRQLTMEEFERAVGHSPIVQELMRRESVERAEEKDDPDSNGRLSFKSK

Protein Length: 359

Fln nts: CCTCCACTTCTGGATCAGATACCGAAGAAGACGGCGATTATTTGAACGCTGTAAATAAATGTCAGAAATCGAACACCGTTCGAAATGGCTGCACTCTACCCGTGGCAGCAGCAGCATCGTTGGCATCAAAATACGAAGTATGGAAGGGCGAGCCCGGTTCTGTTCGGGAACGCCGCCAGCGGCTTCTCCGAGAGCTGGGATTAAGCGACGATAGGGAGCTCCAGCGAGAACCCCCTGCGAATTTCAGGCGACAGGAGATTTCTGAAATTCAGCCCGACACTCAATGCTCAACCAGTGGTTCCCATACGTTTGCCAAGCAGCGGGGGTTCCATGGTGATGCAAATCTTAGAACGAAACAAGGACCGCCAGTGGACATGTTTAGATCCATTTCATGCGACGAGCTTTCGAGAAGAAAGCCGGTGGAGTCAGCCTGGAGCATAGCGAGGTCTCGGTCGGATGGTGCAAATCCAGCGGAGGTGTGGCGTAAAGAAGGCGCCAAGCCGCCCCTCGGTGGTGGTGTCCGGGCATCTGCGATCGTTGCTATGGAAACGGCAGCAAAGGACCTCTTGCAATCGGGCAATAGCAAACACCTAAAGGATGAGATGGATTTGGGCCACGGAAAATACAATCATTTGTCTTCTGGCGGGGATCAGGTTAGTAACCTTGGAAGCAGAGTTGACAGAAATGACGAGAGCAATTCGGACTCTGTGCAGGTTTTCTTTAGGTCTAGTGATCTTGGTCTTGGGGATTTAACAGTTCAGCTTAGTAGAGAAGCAGAACAAGCTAGGAGGGATGGCATTGGTGATATCTCTCACACAGATAGCAGCAGAGGGTCTTTTTGTAAGATAAAGAATCTAGATAATGGAAAGGAGTTTGTTGTGAACGAAGTAGGCGAAGATGGCATGTGGAACAAGCTCAGAGACGTGGAAACTGGTAGACAGCTAACCATGGAGGAGTTTGAGAGAGCTGTTGGGCATTCTCCTATTGTCCAGGAACTCATGCGGCGGGAAAGTGTGGAACGAGCAGAGGAGAAAGACGATCCTGACTCAAATGGAAGGCTTAGTTTCAAGTCCAAA

Fln Alignment:

Contig25092___STSGSDTEEDGDYLNAVNKCQKSNTVRNGCTLPVAAAASLASKYEVWKGEPGSVXXXXXXXXXXXXXSDDRELQREPPANFRRQEISEIQPDTQCSTSGSHTFAKQRGFHGDANLRTKQGPPVDMFRSISCDELSRRKPVESAWSIARSRSDGANPAEVWRKEGAKPPLGGGVRASAIVAMETAAKDLLQSGNSKHLKDEMDLGHGK-YNHLSSGGDQVSNLGSRVDRNDESNSDSVQV---FFRSSDLGLGDLTVQLSREAEQARRDGIGDISHTDSSRGSFCKIKNLDNGKEFVVNEVGEDGMWNKLRDVETGRQLTMEEFERAVGHSPIVQELMRRESVERAEEKDDPDSN
F6H267_______________SCSSSNSDDDADPNASPNYASEH-------PFPIPKFPIGASKYDIWISEPSSIEERRSRLLREMGLSNDPSLSRVKP-----------------------TADRSNG---------------DIGRSVSSDRLAGQG--EAGVVICRSKSDGAK--DQCNSSVCSPPI---LSICSVV------------NNSKLVNSRSSGSNGSPIANAASASPNKPPTGKMCRRVDETRGDSTKSEPSFGRNSFSGSGNGT------GGECDEDSDCNVVARTVPHDQVCTIKNLDNGKEFVVNELREDGMWNKLKEVGTDRQLTMEEFEMCVGHSPIVQELMRRQNVEEG-NKDNLDIN

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
544	66			33	0.997452
606	20		80		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
105	116	GCA GCA GCA GCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain