SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24984

Length: 1272 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene24984 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb\|AEE78537.1\| transducin/WD40 domain-containing protein [Arabidopsis thaliana]	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	44%
Blast2go	transducin wd40 domain-containing protein	-	-	56%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: E0CVB7

Fln msg: your sequence is shorter than subject: 383 - 800

Fln protein: TAIRSIDTDLVDPMYQSRSQKAAAQFFWIGGQQLKSSLGKLSECRSEMYGGFSEKEVVCWESNVLWSLKHFEDVSNPLVLWDVLMALLAIKVLTLNLFETILSKWLSSWFSGSRQACALERCLIHLPRLLSKASCRRIHLLVIICRRLLLSGIKIESLSSGLFEVDKKESIDRREQLKGWTKLLQSSEHELRERLVYFTLSAISCRVSYVQPVCHLGKTAWVPAGAPQMEKWVSLNSAKVPDPLKQLAGQIRELGRKRVACISEYAASERCNFCNAPVQFKSPELAYCQAGRCNSGSQNHKLQRCAVSMQVCPAISLWFCICCERWALKQAPDMFFYLSSLQDVKYLSEHFLLRGCPKPLCPFCGILMQRLLPEFLLTSSPV*

Protein Length: 384

Fln nts: ACTGCTATACGGAGCATTGATACTGATTTAGTGGATCCCATGTATCAATCAAGGTCCCAGAAGGCAGCTGCACAGTTCTTCTGGATAGGCGGTCAGCAGTTGAAATCATCTCTGGGAAAATTATCAGAGTGTAGGTCTGAAATGTATGGTGGCTTTTCAGAGAAGGAAGTTGTTTGTTGGGAGTCAAATGTGCTATGGTCTCTGAAGCATTTCGAGGATGTGTCAAACCCACTAGTTCTTTGGGATGTTCTAATGGCATTGTTGGCTATAAAGGTTCTAACATTAAATTTGTTTGAAACAATACTCTCCAAATGGCTCTCTAGCTGGTTCTCAGGGAGTCGTCAGGCGTGTGCTTTGGAAAGGTGTCTAATTCATTTACCAAGGTTACTATCGAAGGCAAGTTGTCGTCGCATTCATCTGCTAGTCATTATCTGCAGGCGTTTACTGCTATCAGGCATCAAGATAGAGTCTCTAAGTTCTGGGCTATTTGAGGTCGACAAGAAAGAAAGCATTGATAGGCGTGAGCAGTTGAAGGGCTGGACCAAGTTATTGCAGAGCAGTGAGCATGAGCTTAGAGAAAGGCTTGTATACTTTACTCTGTCAGCTATATCGTGCCGTGTTTCTTATGTGCAGCCAGTTTGTCATCTAGGAAAAACAGCTTGGGTGCCAGCAGGAGCTCCACAAATGGAGAAATGGGTTTCTTTGAATAGTGCCAAAGTACCTGATCCTCTTAAGCAACTTGCAGGACAAATCCGGGAACTTGGGCGAAAGAGAGTTGCCTGCATCAGTGAATATGCTGCCTCAGAGCGTTGTAACTTTTGCAATGCACCGGTGCAATTTAAATCTCCTGAACTTGCCTACTGTCAAGCTGGGCGTTGTAATTCGGGCAGCCAAAATCACAAACTCCAGCGTTGTGCAGTTTCCATGCAGGTTTGTCCTGCTATTTCTCTATGGTTTTGCATTTGCTGTGAGAGATGGGCTCTCAAACAAGCCCCTGATATGTTCTTCTATCTGTCATCATTGCAAGATGTTAAATATTTATCTGAGCACTTTCTTCTACGTGGATGTCCAAAACCTTTATGTCCTTTCTGTGGCATACTGATGCAAAGATTGCTGCCTGAATTTCTACTTACAAGTTCACCAGTATAG___ATATGACAGGTTTTGATAGTTGACATTGAAGATTGAAGTAAATTCTTTTAGCTCTATAATGGTAAGGAAAGACAGCTTTCTTAGCCACATTCTCCATTTTGTTAGTGGACACAAGTGAAAAGT

Fln Alignment:

Contig24984___RSIDTDLVDPMYQSRSQKAAAQFFWIGGQQLKSSLGKLSECRSEMYGGFSEKEVVCWESNVLWSLKHFEDVSNPLVLWDVLMALLAIKVLTLNLFETILSKWLSSWFSGSRQACALERCLIHLPRLLSKASCRRIHLLVIICRRLLLSGIKIESLSSGLFEVDKKESIDRREQLKGWTKLLQSSEHELRERLVYFTLSAISCRVSYVQPVCHLGKTAWVPAGAPQMEKWVSLNSAKVPDPLKQLAGQIRELGRKRVACISEYAASERCNFCNAPVQFKSPELAYCQAGRCNSG-SQNHKLQRCAVSMQVCPAISLWFCICCERWALKQAPDMFFYLSSLQ-DVKYLSEHFLLRGCPKPLCPFCGILMQRLLPEFLLTSSP
E0CVB7_______________RGFDAGLLNPMYQARTQKAAIEFFWIGGQQLESSTNRNLEFGIENFPGFPKKELIYWECNMLWYLSQYEHLDKPLVVWDIVAALLAFKQSAPKYVELVLVKWLSVSNVESHLGLSTGNILSHASRTFSNTTTRKLHLFNIICRHVVLSELKADKINSKQPNLEEFGGAE-EEKLKLWMELLLCSERELRERLVGFAFSTVLGLMSSLAAKVYRAE-GWDPVGLAQMEQWVALNYDHVQDQLKLLASEVRNLDKRKLHSVCEYVAGEQCSYCSASVPFESPEIAFCQGAKCSGGVGQSHKLARCAVCMQVCPPTSSWFCTCCQRYSSKLAPPQFFLMPRYPLDFKSSTESCTLNSFSKPFCPFCGILLQRLQPVFLLSASP

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
642	25		75		0.996473
643		75	25		0.996473
649		75	25		0.996473
650	75	25			0.996473
651		25		75	0.996473
656	75		25		0.996473
657	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain