SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24872

Length: 3149 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene24872
CGTCGTGACCTTGGCTGTCACTCAGACCCAGGGCTTCTGAAAATTCGGTAGAAGATATACAGTCTGCCGCTGCTGCCACAATTTCCTTTGCAGTGCAATTCAGAGCACCTGTAAGTGTGGGCGATCTCAATGTATGTGCCAGAGTGTGGCAGAAAAACAGTGTGTTGACTCTAGATGATGCATTGGGTAGATTGAAGGATTCAAAGTCCTTATTCATGGCTTCCCATGTGGTTGGTTATCCCCGAATTGCCCCCAAGAGAGAACTCAAGTTTGCACTTGAATCCTTTTGGGATGGCAAGAGCAGTGCAGCTGAGTTGCAGAATGTAGCAAAGAATTTGAGAGCTGCAACATGGAAGCAAATGGCTGATGCCGGTCTAACATACATCCCAAGCAACACCTTTTCCTACTATGATCAGGTCCTTGACACAACTGCCATGGTTGGGGCTGTTCCTCCACGATATGGGTGGACTGGTGGTGAGATTGGATTCGACACTTACTTTTCAATGGCACGCGGAAATGCTAAGCTTCCTGCTATGGAGATGACCAAGTGGTTTGACACTAACTACCACTACATCGTTCCAGAGCTTGGACCAGAAATTAAATTCAAGTACTCTTCACACAAAGCTGTGGATGAATACAAAGAGGCTAAAGAGATTGGTATTGAGACTGTACCTGTCATTGTAGGTCCTGTGTCATACTTGTTGTTATCAAAGCCTGCAAAAGGTGTTCCTAAAACATTCAACCTTCTTTCTCTGCTTGATTCAATTCTGCCGGTCTATAAAGAGGTCTTAGGTGAGTTGAAGGAGGCTGGGGCAACATGGATACAGTTTGATGAACCCTCGCTTGTAATGGACCTTGAGGCTCACCACCTGAATGCTTTCTCTAAAGCTTATTCTTTCTTAGAAGAAGTGTTGGTTGGGACCAAATTGCTTGTAGAAACATACTTTGCTGATATTCCTGTTGAGACATATAGGACCATCATCCAGTTGAAGGCTATATCTGCTATTGGGTTAGACCTAGTACGTGGAACTAAAACACTCAACCTTGTCAAAACTGTTGGCTTTCCGGGAGACAAATACCTTTTCGCTGGAGTTATTGATGGTAGAAACATCTGGGCTAATGATTTGGCAGCATCGTTTAGCATTTTAAAGGATCTCGAAAAGAGTGTTGTTAAAGACAAAATAGTTGTCTCCACCTCCTGCTCTCTTCTCCATACAGCTGTGGATTTAGTAAATGAGACAAAGCTTGATAATGAGATTAAGTCCTGGCTTGCATTTGCTGCACAAAAAGTACTTGAAGTAGTAGCTCTGGCAAAAGCACTGATTGGTCAAGCAGATCAGGCATATTTCACTGCCAACGCAGCTGCTATATCTTCAAGAAAGACCTCTCCTAGAGTGAACAATAAGGCAGTGCAAAAAGCTACTGAAGCATTAAAAGGCTCTGATCACCGGCGAGCTACACCTGTAGTTGTTCGTTTAGATACGCAGCAGAAAAAGTTGAACCTCCCAATTCTTCCAACGACCACAATTGGGTCCTTTCCTCAGACAGTAGAACTTCGCAGAGTTCGCCGTGAATACAAATCAAATAAGATTTCAGAAGCAGATTACATTCAGTCCATTCAGCAGGAAATCGCAAAAGTGGTTAAACTGCAGGAAGATCTGGACATCGATGTTCTAGTGCATGGTGAACCTGAGAGAAACGACATGGTAGAATATTTTGGGGAACAGCTTCAGGGATTTGCATTCACAGTTAATGGCTGGGTACAGTCTTATGGTTCTCGTTGTGTGAAGCCACCGATTATTTATGGAGATGTCAGCCGCCCAAAACCAATGACTGTGTTTTGGTCAAAGTATGCCCAGAGTTTGACTGCCCGCCCTATGAAGGGAATGCTTACAGGTCCTGTGACAATTTTGAATTGGTCCTTTGTAAGAGATGATCAGCCCAGGTCAGAAACCAGCATGCAAATTGCACTAGCTATCAAAGACGAGGTTGAAGATTTGGAGGCAGCTGGTATTCAGGTGATCCAAATCGATGAGGCAGCCCTGAGGGAAGGACTACCTTTGCGTAAGGCAGAACAGGCTCACTACCTGGAATGGGCTGTTCATGGTTTCCGTATCACCAATTGTGGTGTAAAGGATACTACTCAGATCCACACCCACATGTGTTACTCCAACTTCAACGACATTATTCATTCCATTATTGATATGGATGCCGATGTCATTACCATTGAGAATTCCCGCTCCGATGAGAAATTACTCAGAGTTTTCCAGGAGGGTGTGAAATATGGGGCCGGAATCGGCCCTGGGGTTTATGATATACACTCTCCTCGCATTCCAGACACAGAAGAAATTGCAGACCGTATCCGCAAGTTACTCGCTGTGTTGGAGACAAACATCCTGTGGGTAAATCCAGATTGTGGTTTGAAAACCAGGAAGTATGATGAAGTTGTTCCTGCGTTGACCAACATGGTTGCATCTGCCAAGTTGCTGCGAACTGAGCTTGCCTCTGCAAAATGATCAAGAAAGCAATTCAACATCAGCATTTTAGTGCAATAAAGAGGTGGAAGAATAATTTTGGATTGCTGAATAAGGGACATATTACGGCCTCCTGTGAAGGGTTAGTTGGTTTGTGGTCTTGCGGTAGATCAGTGGAAGTTCACCATAACTACCCAAGGTTTGATTCTCAGTGCATATCATATGGCTGTACCTGAGAATCACCGAAGTGACACATCCCAGAGATTGAGCCCACTCTGGCCAAAAATGGAGAGTTTCTGTTAAAAGGAAAAGCCTTAATGTTGATGTAAAGAGACACTAGTTTTTAAAGAATTTTCAGAGTTGTCAGTTGACTGGCCTGATCATTCTTCTAGATATTTCAGTAGACATTTTTCTTCCTGCTATTACAAAAGCATCATGCGCATGGAAAATGTCTCATCTAAAGTTGTTATAACACATATGGAGTTTCTCATTTCTGCATGCCTGTTGTGCCTACTATTGATATAAAAATTTTCAGCGTAGTTTCTGAGTCCGAGTTTGTTATTTAGCCTATGAATGTCTCATTTTGTTTAGTTTTTGCCCAATCAGATATTTGGAGGAAAGATTTCAATGATTGTGTGTGTTACGACTTCACAAAACACATCACAAATTATTAAA

Ace file of the UniGene sp_v2.0_unigene24872 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine n=2 Tax=Populus trichocarpa RepID=B9I615_POPTR	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	5-methyltetrahydropteroyltriglutamate-homocysteine expressed	-	-	90%

Source	InterPros	Term	Type	Identity
Sma3	Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal	IPR013215	-	-
Sma3	Methionine synthase, vitamin-B12 independent	IPR002629	-	-
Sma3	Cobalamin-independent methionine synthase	IPR006276	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKF4

Fln msg:

Fln protein: MASHVVGYPRIAPKRELKFALESFWDGKSSAAELQNVAKNLRAATWKQMADAGLTYIPSNTFSYYDQVLDTTAMVGAVPPRYGWTGGEIGFDTYFSMARGNAKLPAMEMTKWFDTNYHYIVPELGPEIKFKYSSHKAVDEYKEAKEIGIETVPVIVGPVSYLLLSKPAKGVPKTFNLLSLLDSILPVYKEVLGELKEAGATWIQFDEPSLVMDLEAHHLNAFSKAYSFLEEVLVGTKLLVETYFADIPVETYRTIIQLKAISAIGLDLVRGTKTLNLVKTVGFPGDKYLFAGVIDGRNIWANDLAASFSILKDLEKSVVKDKIVVSTSCSLLHTAVDLVNETKLDNEIKSWLAFAAQKVLEVVALAKALIGQADQAYFTANAAAISSRKTSPRVNNKAVQKATEALKGSDHRRATPVVVRLDTQQKKLNLPILPTTTIGSFPQTVELRRVRREYKSNKISEADYIQSIQQEIAKVVKLQEDLDIDVLVHGEPERNDMVEYFGEQLQGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSKYAQSLTARPMKGMLTGPVTILNWSFVRDDQPRSETSMQIALAIKDEVEDLEAAGIQVIQIDEAALREGLPLRKAEQAHYLEWAVHGFRITNCGVKDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLRVFQEGVKYGAGIGPGVYDIHSPRIPDTEEIADRIRKLLAVLETNILWVNPDCGLKTRKYDEVVPALTNMVASAKLLRTELASAK*

Protein Length: 768

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGACCCAGGGCTTCTGAAAATTCGGTAGAAGATATACAGTCTGCCGCTGCTGCCACAATTTCCTTTGCAGTGCAATTCAGAGCACCTGTAAGTGTGGGCGATCTCAATGTATGTGCCAGAGTGTGGCAGAAAAACAGTGTGTTGACTCTAGATGATGCATTGGGTAGATTGAAGGATTCAAAGTCCTTATTC_-_ATGGCTTCCCATGTGGTTGGTTATCCCCGAATTGCCCCCAAGAGAGAACTCAAGTTTGCACTTGAATCCTTTTGGGATGGCAAGAGCAGTGCAGCTGAGTTGCAGAATGTAGCAAAGAATTTGAGAGCTGCAACATGGAAGCAAATGGCTGATGCCGGTCTAACATACATCCCAAGCAACACCTTTTCCTACTATGATCAGGTCCTTGACACAACTGCCATGGTTGGGGCTGTTCCTCCACGATATGGGTGGACTGGTGGTGAGATTGGATTCGACACTTACTTTTCAATGGCACGCGGAAATGCTAAGCTTCCTGCTATGGAGATGACCAAGTGGTTTGACACTAACTACCACTACATCGTTCCAGAGCTTGGACCAGAAATTAAATTCAAGTACTCTTCACACAAAGCTGTGGATGAATACAAAGAGGCTAAAGAGATTGGTATTGAGACTGTACCTGTCATTGTAGGTCCTGTGTCATACTTGTTGTTATCAAAGCCTGCAAAAGGTGTTCCTAAAACATTCAACCTTCTTTCTCTGCTTGATTCAATTCTGCCGGTCTATAAAGAGGTCTTAGGTGAGTTGAAGGAGGCTGGGGCAACATGGATACAGTTTGATGAACCCTCGCTTGTAATGGACCTTGAGGCTCACCACCTGAATGCTTTCTCTAAAGCTTATTCTTTCTTAGAAGAAGTGTTGGTTGGGACCAAATTGCTTGTAGAAACATACTTTGCTGATATTCCTGTTGAGACATATAGGACCATCATCCAGTTGAAGGCTATATCTGCTATTGGGTTAGACCTAGTACGTGGAACTAAAACACTCAACCTTGTCAAAACTGTTGGCTTTCCGGGAGACAAATACCTTTTCGCTGGAGTTATTGATGGTAGAAACATCTGGGCTAATGATTTGGCAGCATCGTTTAGCATTTTAAAGGATCTCGAAAAGAGTGTTGTTAAAGACAAAATAGTTGTCTCCACCTCCTGCTCTCTTCTCCATACAGCTGTGGATTTAGTAAATGAGACAAAGCTTGATAATGAGATTAAGTCCTGGCTTGCATTTGCTGCACAAAAAGTACTTGAAGTAGTAGCTCTGGCAAAAGCACTGATTGGTCAAGCAGATCAGGCATATTTCACTGCCAACGCAGCTGCTATATCTTCAAGAAAGACCTCTCCTAGAGTGAACAATAAGGCAGTGCAAAAAGCTACTGAAGCATTAAAAGGCTCTGATCACCGGCGAGCTACACCTGTAGTTGTTCGTTTAGATACGCAGCAGAAAAAGTTGAACCTCCCAATTCTTCCAACGACCACAATTGGGTCCTTTCCTCAGACAGTAGAACTTCGCAGAGTTCGCCGTGAATACAAATCAAATAAGATTTCAGAAGCAGATTACATTCAGTCCATTCAGCAGGAAATCGCAAAAGTGGTTAAACTGCAGGAAGATCTGGACATCGATGTTCTAGTGCATGGTGAACCTGAGAGAAACGACATGGTAGAATATTTTGGGGAACAGCTTCAGGGATTTGCATTCACAGTTAATGGCTGGGTACAGTCTTATGGTTCTCGTTGTGTGAAGCCACCGATTATTTATGGAGATGTCAGCCGCCCAAAACCAATGACTGTGTTTTGGTCAAAGTATGCCCAGAGTTTGACTGCCCGCCCTATGAAGGGAATGCTTACAGGTCCTGTGACAATTTTGAATTGGTCCTTTGTAAGAGATGATCAGCCCAGGTCAGAAACCAGCATGCAAATTGCACTAGCTATCAAAGACGAGGTTGAAGATTTGGAGGCAGCTGGTATTCAGGTGATCCAAATCGATGAGGCAGCCCTGAGGGAAGGACTACCTTTGCGTAAGGCAGAACAGGCTCACTACCTGGAATGGGCTGTTCATGGTTTCCGTATCACCAATTGTGGTGTAAAGGATACTACTCAGATCCACACCCACATGTGTTACTCCAACTTCAACGACATTATTCATTCCATTATTGATATGGATGCCGATGTCATTACCATTGAGAATTCCCGCTCCGATGAGAAATTACTCAGAGTTTTCCAGGAGGGTGTGAAATATGGGGCCGGAATCGGCCCTGGGGTTTATGATATACACTCTCCTCGCATTCCAGACACAGAAGAAATTGCAGACCGTATCCGCAAGTTACTCGCTGTGTTGGAGACAAACATCCTGTGGGTAAATCCAGATTGTGGTTTGAAAACCAGGAAGTATGATGAAGTTGTTCCTGCGTTGACCAACATGGTTGCATCTGCCAAGTTGCTGCGAACTGAGCTTGCCTCTGCAAAATGA___TCAAGAAAGCAATTCAACATCAGCATTTTAGTGCAATAAAGAGGTGGAAGAATAATTTTGGATTGCTGAATAAGGGACATATTACGGCCTCCTGTGAAGGGTTAGTTGGTTTGTGGTCTTGCGGTAGATCAGTGGAAGTTCACCATAACTACCCAAGGTTTGATTCTCAGTGCATATCATATGGCTGTACCTGAGAATCACCGAAGTGACACATCCCAGAGATTGAGCCCACTCTGGCCAAAAATGGAGAGTTTCTGTTAAAAGGAAAAGCCTTAATGTTGATGTAAAGAGACACTAGTTTTTAAAGAATTTTCAGAGTTGTCAGTTGACTGGCCTGATCATTCTTCTAGATATTTCAGTAGACATTTTTCTTCCTGCTATTACAAAAGCATCATGCGCATGGAAAATGTCTCATCTAAAGTTGTTATAACACATATGGAGTTTCTCATTTCTGCATGCCTGTTGTGCCTACTATTGATATAAAAATTTTCAGCGTAGTTTCTGAGTCCGAGTTTGTTATTTAGCCTATGAATGTCTCATTTTGTTTAGTTTTTGCCCAATCAGATATTTGGAGGAAAGATTTCAATGATTGTGTGTGTTACGACTTCACAAAACACATCACAAATTATTAAA

Fln Alignment:

Contig24872___MASHVVGYPRIAPKRELKFALESFWDGKSSAAELQNVAKNLRAATWKQMADAGLTYIPSNTFSYYDQVLDTTAMVGAVPPRYGWTGGEIGFDTYFSMARGNAKLPAMEMTKWFDTNYHYIVPELGPEIKFKYSSHKAVDEYKEAKEIGIETVPVIVGPVSYLLLSKPAKGVPKTFNLLSLLDSILPVYKEVLGELKEAGATWIQFDEPSLVMDLEAHHLNAFSKAYSFLEEVLVGTKLLVETYFADIPVETYRTIIQLKAISAIGLDLVRGTKTLNLVKTVGFPGDKYLFAGVIDGRNIWANDLAASFSILKDLEKSVVKDKIVVSTSCSLLHTAVDLVNETKLDNEIKSWLAFAAQKVLEVVALAKALIGQADQAYFTANAAAISSRKTSPRVNNKAVQKATEALKGSDHRRATPVVVRLDTQQKKLNLPILPTTTIGSFPQTVELRRVRREYKSNKISEADYIQSIQQEIAKVVKLQEDLDIDVLVHGEPERNDMVEYFGEQLQGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSKYAQSLTARPMKGMLTGPVTILNWSFVRDDQPRSETSMQIALAIKDEVEDLEAAGIQVIQIDEAALREGLPLRKAEQAHYLEWAVHGFRITNCGVKDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLRVFQEGVKYGAGIGPGVYDIHSPRIPDTEEIADRIRKLLAVLETNILWVNPDCGLKTRKYDEVVPALTNMVASAKLLRTELASAK
B8LKF4_______________MASHVVGYPRIAPKRELKFALESFWDGKSSAAELQNVAKDLRVATWKQMADAGLTYIPSNTFSYYDQVLDTTAMVGAVPPRYGWTGGEIGFDTYFSMARGNAKLPAMEMTKWFDTNYHYIVPELGPEIKFKYSSHKAVDEYKEAKKIGIETVPVIIGPVSYLLLSKPAKGVPKTFDLLSLLDAILPVYKEVLGELKQAGATWIQFDEPALVMDLEAHHLDAFSKAYSFLEEVLVGIKLLVETYFADIPVETYRTIIQLKAISAIGLDLIRGTKTLSLVKTVGFPGDKYLFAGVIDGRNIWANDLAASFSILKDLETIVGKGKIVVSTSCSLLHTAVDLVNETKLDNEIKSWLAFAAQKVLEVVALAKALIGQADQPYFAANAAAISSRKTSPRVNNEAVQKAAEALKGSDHRRATPVIARLDEQQKKLNLPILPTTTIGSFPQTVELRRVRREYKSNKISEADYIQSIQQEIAKVVKMQEDLDIDVLVHGEPERNDMVEYFGEQLQGFAFTVNGWVQSYGSRCVKPPVIYGDVSRPKPMTVFWSKYAQSLTARPMKGMLTGPVTILNWSFVRDDQPRSETSMQIALAIKEEVEDLEASGIQVIQIDEAALREGLPLRKAEQAHYLEWAVHGFRITNCGVKDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLRVFQEGVKYGAGIGPGVYDIHSPRIPDTEEIADRIRKILAVLETNILWVNPDCGLKTRKYNEVVPALTNMVASAKLLRTELASAK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
2836		25		75	0.996473
3125	14			85	0.993533
3131		50		50	1.0
3132		50	50		1.0
3133	50	50			1.0
3134	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain