SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24677

Length: 969 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene24677

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pectate lyase-like protein [Arabidopsis thaliana]	-	-	8.0e-29	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	probable pectate lyase 4-like	-	-	1.23277e-37	90%

Source	InterPros	Term	Type	Identity
Sma3	Pectate lyase/Amb allergen	IPR002022	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	AmbAllergen	IPR018082	-	-

Full-Lengther Next Prediction

SNPs (tot: 86)

Position	A %	C %	G %	T %	Probability
89	50		50		1.0
93	50	50			1.0
94		50	50		1.0
95			50	50	1.0
98	50		50		1.0
100	50			50	1.0
101	50		50		1.0
108	50			50	1.0
110	50			50	1.0
193		14		85	0.993533
194		14	85		0.993533
195	14			14	0.984337
196		28	71		1.0
197		14	71	14	0.984337
198		14	57	28	1.0
199	14		85		0.993533
201		14		85	0.993533
202		28		71	1.0
203	14			85	0.993533
204	71	14		14	0.984337
205			14	85	0.993533
206		14	85		0.993533
207	14	85			0.993533
211		14		85	0.993533
212	14			85	0.993533
213		14	85		0.993533
285	87	12			0.992554
290			12	87	0.992554
295	87	12			0.992554
296			87	12	0.992554
297	87			12	0.992554
299	87		12		0.992554
300	87	12			0.992554
301			87	12	0.992554
304		12		87	0.992554
390	88	11			0.923564
392			88	11	0.923564
393	88	11			0.923564
394			11	88	0.923564
396			11	88	0.923564
398		11		88	0.923564
401	88		11		0.923564
402	88		11		0.923564
404			88	11	0.923564
405	88		11		0.923564
407	88	11			0.923564
410	88	11			0.923564
412		14		85	0.993533
413	14			85	0.993533
605	18			81	0.999994
616	83		16		0.999991
619		81		18	0.999994
626	10		90		0.90298
627	10		90		0.90298
645		77		22	0.999999
650		11		88	0.923564
661	70	10	20		0.999998
666	62			37	1.0
676		12	87		0.992554
677	62	37			1.0
684		12		87	0.992554
685		25		75	1.0
687	12		87		0.992554
713		25		75	0.996473
717	50		50		1.0
718		50		50	1.0
723		25	75		0.996473
735			25	50	0.995533
738	25		75		0.996473
742		75		25	0.996473
748	25	75			0.996473
755	25	75			0.996473
757	25		75		0.996473
777		50		50	1.0
780			75	25	0.996473
791	50	50			1.0
793		75		25	0.996473
803	25	50			1.0
820		75		25	0.996473
830	66		33		0.997452
834		33		66	1.0
838	33		66		0.997452
916	20	80			0.995493
919	20		80		0.995493
921	20		80		0.995493
942	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain