SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24623

Length: 996 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene24623 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative integrase n=1 Tax=Oryza sativa Japonica Group RepID=Q75M81_ORYSJ	-	-	5.0e-11	50%
FL-Next	tr=Putative integrase; Oryza sativa subsp. japonica (Rice).	-	-	0.0	50%
Blast2go	gag-pol polyprotein	-	-	2.8581e-11	68%

Full-Lengther Next Prediction

SNPs (tot: 84)

Position	A %	C %	G %	T %	Probability
529	33	33	33		0.997753
530			33	66	0.997452
553	40		60		1.0
554		20		80	0.995493
555		80		20	0.995493
563	20			80	0.995493
564	80		20		0.995493
570		80		20	0.995493
576		80		20	0.995493
580	20		80		0.995493
581	20		60	20	0.99255
600		16		83	0.994512
603	83			16	0.994512
607	16			83	0.994512
625		85		14	0.993533
626			14	85	0.993533
630		28		71	1.0
631	14	85			0.993533
634		14		85	0.993533
645	14		85		0.993533
648	57		42		1.0
650	87		12		0.992554
651	12	87			0.992554
654	87	12			0.992554
656		87		12	0.992554
662		87		12	0.992554
671		87		12	0.992554
672		12	87		0.992554
673	25		75		1.0
680		87		12	0.992554
687		87		12	0.992554
735	90		10		0.90298
741		10		90	0.90298
746			90	10	0.90298
754			90	10	0.90298
756			90	10	0.90298
758	10	90			0.90298
760		90		10	0.90298
762	90		10		0.90298
765	10		90		0.90298
767	10	90			0.90298
772	11	88			0.923564
774	11	88			0.923564
775		88		11	0.923564
776		88		11	0.923564
785	87		12		0.992554
791	12	87			0.992554
796		87		12	0.992554
798		87		12	0.992554
802		75	25		1.0
810		87		12	0.992554
811	25		75		1.0
815		12		87	0.992554
821	14		85		0.993533
827		85		14	0.993533
834	42		57		1.0
838	14		85		0.993533
848	57		42		1.0
856		85		14	0.993533
858	14	14	71		0.984337
861	85			14	0.993533
862		85	14		0.993533
863		14		85	0.993533
872		16	16	66	0.988813
873	16		83		0.994512
884	16			83	0.994512
896	80		20		0.995493
898		80		20	0.995493
901	20		80		0.995493
904	20	80			0.995493
905	40		60		1.0
906	20			80	0.995493
909	80	20			0.995493
910	20			80	0.995493
911	20		80		0.995493
913		20	80		0.995493
915	25			75	0.996473
916	25			75	0.996473
917			25	75	0.996473
919		75	25		0.996473
921		25	75		0.996473
923		25		75	0.996473
926	75	25			0.996473
933		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain