SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24563

Length: 1305 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene24563

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chalcone synthase n=2 Tax=Anthurium andraeanum RepID=Q1W9N0_ANTAD	-	-	77%
FL-Next	tr=Pinocembrin chalcone synthase; Pinus densiflora (Japanese red pine).	-	-	90%
Blast2go	chalcone synthase	-	-	85%

Source	InterPros	Term	Type	Identity
Sma3	Chalcone/stilbene synthase, N-terminal	IPR001099	-	-
Sma3	Polyketide synthase, type III	IPR011141	-	-
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	Chalcone/stilbene synthase, active site	IPR018088	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q9MBF0

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 482 and 482, STOP codon was not found. Distance to subject end: 7 aas,

Fln protein: MPGTGSLDLDLEAFRKAQRADGPATILAIGTANPPNAVAQSSYPDYYFRITNSEHMTELKHKFQRMCDKSGIKKRYMYLTEEILKANPNLCDYMAPTLDARQDMVVVEVPKLGKEAAAKAIKEWGQPKSKITHVxxCTTSGVDMPGADYQLTKLLGLRSSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVGVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGASALIVGADPIPEVEKPLFPAAVDCTDHSSRQRRSHRRSPERGGPYLPPSQRRSGAHLQQHRKESGGRLPALRNLRLEPIILDRPPRRPCHSGSGGGKVESGSQETESNEASTERIRKHVERVRALHLGRVKEVVYAEWVFHNGRGIGCGSSVWIRAGPHCRNSRPQERFPAAAALMEGRQA

Protein Length: 410

Fln nts: AGCAAGCGCCTGCTGCATCTCACATAAAGCTCGCCTCTTTGTTGCTTAATTATTACACGTAAGCACAGCGAGCAAGC_-_ATGCCAGGGACTGGAAGTTTGGATTTGGATTTAGAGGCATTCAGGAAGGCTCAGAGGGCAGATGGCCCCGCCACCATCCTCGCTATCGGCACTGCCAATCCCCCCAATGCCGTCGCCCAGAGCAGTTACCCCGATTACTACTTCCGCATCACCAACAGCGAGCATATGACAGAGCTCAAGCACAAATTCCAGCGAATGTGCGACAAATCGGGAATAAAGAAGAGATATATGTACTTGACGGAGGAGATTCTGAAGGCGAATCCCAATCTATGCGACTACATGGCGCCGACGTTGGACGCACGGCAGGACATGGTTGTGGTGGAGGTGCCCAAGCTTGGAAAAGAAGCGGCTGCCAAGGCCATCAAGGAATGGGGTCAGCCCAAATCCAAGATCACTCATGTCxxxxxxTGCACTACCAGTGGAGTCGATATGCCCGGAGCCGACTATCAGCTAACAAAGCTTCTGGGTCTCCGCTCCAGCGTGAAGAGAGTGATGATGTACCAACAGGGCTGCTTCGCTGGAGGCACGGTTCTCCGCGTCGCTAAAGATCTGGCAGAGAACAACCGGGGAGCTCGGGTTGGGGTTCTGGTCGTCTGTAGCGAAATCACGGCCGTTACCTTCCGTGGCCCCTCCGACACTCACCTCGACAGCATGGTCGGCCAAGCTCTCTTCGGCGACGGTGCATCTGCACTCATTGTGGGAGCCGATCCCATCCCGGAAGTGGAGAAGCCCCTGTTTCCAGCTGCTGTGGACTGCACAGACCATTCTTCCCGACAGCGCCGGAGCCATCGACGGTCACCTGAGAGAGGCGGGCCTTACCTTCCACCTTCTCAAAGACGTTCCGGGGCTCATCTCCAACAACATAGAAAAGAGTCTGGTGGACGCCTTCCAGCACTTCGGAATCTCCGACTGGAACCAATTATTCTGGATCGCCCACCCAGGAGGCCCTGCCATTCTGGATCAGGTGGAGGCAAAGTTGAATCTGGATCCCAAGAAACTGAGAGCAACGAGGCAAGTACTGAGCGAATACGGAAACATGTCGAGCGCGTGCGTGCTCTTCATCTTGGACGAGTTAAGGAAGTCGTCTATGCGGAATGGGTGTTCCACAACGGGAGAGGGATTGGATGTGGGAGTTCTGTTTGGATTCGGGCCGGGCCTCACTGTCGAAATAGTCGTCCTCAAGAGCGTTTCCCaGCCGCTGCAGCATTGATGGAAGGAAGACAGGCTCC

Fln Alignment:

Contig24563___SLDLDLEAFRKAQRADGPATILAIGTANPPNAVAQSSYPDYYFRITNSEHMTELKHKFQRMCDKSGIKKRYMYLTEEILKANPNLCDYMAPTLDARQDMVVVEVPKLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRSSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVGVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGASALIVGADPIPEVEKPLF
Q9MBF0_______________TLGLDLEAFRKAQRADGPATILAIGTATPPNAVDQSSYPDYYFKITNSEHMTELKEKFRRMCDKSAIKKRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGAR--VLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAALIVGADPVPQVEKPCF

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
827		20	80		0.995493
829			80	20	0.995493
867		50	50		1.0
921	80		20		0.995493
941	14			85	0.993533
942		85		14	0.993533
943		85	14		0.993533
944	85		14		0.993533
945	85		14		0.993533
1065		20		80	0.995493
1145		75		25	0.996473
1172		33	66		0.997452
1176	66	33			0.997452
1180	33		66		0.997452
1183	66		33		0.997452
1189		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain