SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24550

Length: 458 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene24550
ATGGGGGCACTTCCCGCATTTGTTTGACAGTGTTTGTGTTTGGGTATCTCTGGTGATCTGTGTGGCTGTTTTGTGAGTGACGGAAGTGTGAAAAATGGCTGTGTCGAAGAAGATGGTGGAGGCTGTGTTTGTGGTTGGACTCCCAAGTGAAAGCCACCCCTGATAGGCAGGCTGTTTGCAACTGCCTCAAGACACAAGCACAGTCATATGGGGTCAAGTTGGGAAAGGCCGCTAATCTGCCGGGTCTGTGCAAGGTCACCGATCTCAACGTGCCCATCTCTCCTAATGTTGACTGTTCCAAGGTTCATTAATGAAGTCTGATGGCAATCAAATGTTGGCTGGTGGGGTTTATTTAGTGCTTTACTCTTAAGTATAGGTGTTAACAGTAGTATGCTATTAACGATCATTTGTAGTGACGATGGACTGTTTGTGTCTATGGGAGTCGCTCATGTGACATT

Ace file of the UniGene sp_v2.0_unigene24550

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Non-specific lipid-transfer protein n=4 Tax=Pinus RepID=NLTP_PINTA	-	-	7.0e-26	98%
FL-Next	sp=Non-specific lipid-transfer protein; Pinus taeda (Loblolly pine).	-	-	0.0	98%
Blast2go	nonspecific lipid transfer protein	-	-	6.0587e-33	88%

Source	InterPros	Term	Type	Identity
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-
Sma3		IPR003612	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q41073

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 103 - 123

Fln protein: GGTSRICLTVFVFGYLW*SVWLFCE*RKCEKWLCRRRWWRLCLWLDSQVKATPDRQAVCNCLKTQAQSYGVKLGKAANLPGLCKVTDLNVPISPNVDCSKVH*

Protein Length: 104

Fln nts: ATGGGGGCACTTCCCGCATTTGTTTGACAGTGTTTGTGTTTGGGTATCTCTGGTGATCTGTGTGGCTGTTTTGTGAGTGACGGAAGTGTGAAAAATGGCTGTGTCGAAGAAGATGGTGGAGGCTGTGTTTGTGGTTGGACTCCCAAGTGAAAGCCACCCCTGATAGGCAGGCTGTTTGCAACTGCCTCAAGACACAAGCACAGTCATATGGGGTCAAGTTGGGAAAGGCCGCTAATCTGCCGGGTCTGTGCAAGGTCACCGATCTCAACGTGCCCATCTCTCCTAATGTTGACTGTTCCAAGGTTCATTAA___TGAAGTCTGATGGCAATCAAATGTTGGCTGGTGGGGTTTATTTAGTGCTTTACTCTTAAGTATAGGTGTTAACAGTAGTATGCTATTAACGATCATTTGTAGTGACGATGGACTGTTTGTGTCTATGGGAGTCGCTCATGTGACATT

Fln Alignment:

Contig24550___DSQVKATPDRQAVCNCLKTQAQSYGVKLGKAANLPGLCKVTDLNVPISPNVDCSKVH
Q41073_______________DSQVKATPDRQAVCNCLKTQAKSYGVKLGKAANLPGLCKVTDLNVPISPNVDCSKVH

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
277		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain