SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24360

Length: 1152 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene24360

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen major allergen No.121 isoform 1 n=1 Tax=Cryptomeria japonica RepID=Q588C0_CRYJA	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	xyloglucan endotransglucosylase hydrolase	-	-	79%

Source	InterPros	Term	Type	Identity
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLP1

Fln msg:

Fln protein: MDMGMPLLFLFLLITSSSLLVTVSANFYNDVDITWGNGRGKILDNGQQLQLTLDRTSGSGFQSKNEYLFAKIDMQIKLVPGNSAGTVTAYYLSSQAPKHDEIDYEFLGNLSGDPYIMHTNIFAQGLGNREQQFYLWFDPTLDFHTYSMLWTPNQITFSVDGIPVRVFKNRETELGKIDSNYHYPKSQAMRMYSSLWNADDWATRGGLVKTDWSKAPFLASFSNFSAATSSSNLAGEEALDSNQEQKLQWVRKNYMIYDYCADTKRFPQGLPAECK*

Protein Length: 277

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTGAGTGATCTTACTCATTCGTTTCACTACTCTTTCTTTGCGCGCGTCCATCCCGAGCTATTCTATTCCTTTCATCCCTTGCCTACACTAATCTGCACTTGGATCTCAAATTCAATTTCCTCTATTTCTATTAATCCATAATT_-_ATGGACATGGGCATGCCCCTCCTCTTTCTTTTCTTATTAATAACCTCGTCGAGTCTTCTTGTAACTGTTTCTGCAAATTTCTACAACGATGTAGACATCACATGGGGCAATGGTCGTGGTAAAATCCTTGACAATGGCCAACAATTACAGCTTACTCTGGATCGCACTTCAGGTTCCGGGTTTCAATCCAAGAATGAATATCTCTTTGCTAAAATTGATATGCAAATCAAGTTGGTACCTGGCAACTCTGCCGGCACAGTTACTGCCTATTATCTGTCGTCTCAAGCTCCCAAGCACGACGAAATAGACTACGAATTTCTAGGCAACCTCTCTGGAGATCCCTATATTATGCACACCAACATCTTCGCTCAAGGCCTTGGCAATCGTGAACAGCAATTCTACTTGTGGTTCGACCCAACCCTCGATTTCCACACTTACTCCATGCTCTGGACACCAAATCAAATTACATTTTCTGTGGACGGGATTCCTGTTCGTGTGTTTAAAAACAGGGAGACAGAGTTGGGTAAAATAGATAGCAATTATCATTATCCGAAGAGCCAAGCAATGAGGATGTACTCCAGCCTTTGGAATGCAGATGATTGGGCAACGAGAGGTGGCCTCGTCAAGACAGACTGGAGTAAAGCCCCCTTTCTTGCATCCTTCAGCAACTTCAGTGCTGCTACTTCTTCTTCCAACTTGGCGGGAGAGGAGGCTTTGGACTCGAACCAAGAGCAGAAGCTTCAGTGGGTGCGAAAGAACTACATGATCTACGATTACTGTGCAGACACAAAGCGGTTCCCCCAGGGGCTACCCGCAGAATGCAAATGA___GCACTCTTGACTCATCTTCATCGTCTGATTGATGTATTTTAGATGCCGTGTCCTTACAACCATTCTTTCCTTCCTTGTATTCTGTTGTCTGGCATTCATTCTGTCACTGTTTTCCAGTGCATAGATTTCTGCATACAAAATCTGTAATAATAAAG

Fln Alignment:

Contig24360___ANFYNDVDITWGNGRGKILDNGQQLQLTLDRTSGSGFQSKNEYLFAKIDMQIKLVPGNSAGTVTAYYLSSQAPKHDEIDYEFLGNLSGDPYIMHTNIFAQGLGNREQQFYLWFDPTLDFHTYSMLWTPNQITFSVDGIPVRVFKNRETELGKIDSNYHYPKSQAMRMYSSLWNADDWATRGGLVKTDWSKAPXXXXXXXXXXXXXXXXXXGEEALDSNQEQKLQWVRKNYMIYDYCADTKRFPQGLPAECK
A9NLP1_______________ANFYSDFDITWGDDRAKILDNGQQLQLTLDRTSGCGIQSKQEYLFAKIDMQIKLIPGNSAGTVTTYYLSSQGPKHDEIDFEFLGNLSGDPYVMHTNVFAQGLGNREQQFYLWFDPTLDFHTYSVLWTPNQIIFSVDGTPVRVFKNRETELGKVDTNYHYPKSQAMRIYSTLWNADDWATRGGLVKTDWTKSPFAASFRNFNAVTSSSNSTAEEALDSNQERSLQWVQKNYMIYDYCADTKRFPQGLPPECK

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
829		71		28	1.0
830			28	71	1.0
835		71		28	1.0
836	71		28		1.0
838		57		42	1.0
839		28		71	1.0
842	71			28	1.0
849		71		28	1.0
850		28		71	1.0
854		22		77	0.999999
855	22	77			0.999999
862		87		12	0.992554
868		12	87		0.992554
870	12	87			0.992554
871		12	87		0.992554
880			87	12	0.992554
889		87		12	0.992554
896		87	12		0.992554
913	12		87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain