SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24354

Length: 1991 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene24354
GTGTTGACTAATAATTAGAAATCATTTTTGTGATTTAACAGAATAACCAGAATCAAGACGAATGAATTCTGTAAAAATCAATGACCTGAAACCCTCCCCTCTGGTATTCTAACAGCTAATTCAATTATTTTGCATTAAATCAAAATGAATATCTTTCACAGGAGACAATTGCATAGAAAGGAACCTTTCCCCAACATTGTGCAGCAATTAATACACTCCCAAACATAGAACATCAATCTAAACTAAACTCTAAACTCTAGTTTCAACTGAGTTCTCTGCCTCTCAGTATAAATTAAACTCTCCGTTGCCTCTGAGAATTTCTACCCACTAGTTTGCTACTACCTTCTCAAAAAATTGGAACAATGTCAGAAAATGACAATTCTCTTGCTAAACCATCCCAGATGCTCTCACTGATCTCCTGAGACCGTCTTAATAATATCAGAATCACCTGGATCCATAATGCTAAGACAGCACACACGGTAATACTTGCCACAGGCTGTTCCCAGATCAACATTGTTTCCATTGAAATGATGCACTCCAACCTTAGCAAGCATAGCATAATACTCTATTTCTGATCTACGAAGAGGAGGGCAGTTATTTGCAATGATAATAAATTTTCCTTTGTTAGTCCTTATAGACTTGATGGTAGTCTTGTAACCCAGTGTATACTTGCCACTCTTCATGACAAGCGCCAATCTGCTGTTGATATTCTCATGAGCCTTTTTAGTTTTCTTTGTGGCCACCATTGTGCCTGTTGCCTGCAATAATACGCTCGCCTCGCCTCGCCTCGCCTCGCCCCGGCCGCACTAAGGGTTTCTGAGATACGTGTTCGAGTCTGACCGGCTACGTTTACGCTTTCTTTCAGTAAGAGGAGTGTTCTGTATTTGTGAGTGCGAGCGAGAAAATGGCTCAAGAGAATGCGGCGGCTGTGGCAGAGAACGGGAAGGGAAATGGTGCTGTGGCTAAGCTGCCGACGTTCTCTATTCTGAAACCCCATTTGATTGTGGAGGCTCCGCATGCTGCGGACGCCATAAGTTTCTATAAGCGCGTGTTTGGGGCTGAAGAAATTGCGAAGTCTCATCATCCCAAGCGTAAGGCTGACCAAGAGCTCCCTCTCATCCTTCATGCCCATTTGAAGTTCGGTGCTGCCGAGGTTATGGTCTGTGATGAGACCGAAGAGGCCGGTGCAGAGGTGAAATCGCCGGTGGCCCTTAAGGGCACCTCAGTGATTCTCCATTTGGAGACGGACGACGTTGATGCGGCAGTTAAACTTGCGGTGGACGCCGGGGCAACTGTTACTGAAGAGGTTGCGGAACGTCCTTGGGGTCAACGATACGGAAAGGTGAAGGATCCCTATGGTTTTGTATGGAGTTTCGCTACCACCATTAAAGAGTCTGCCGTAGCCGAGGACGACGCGCAAGCTTAAGCGTAGGCTTAACTTCTGCGTATTTTGCGTCTAACCTTTTTTCTTGACCCTTCTCCGTCTGAACTCGTAATTTGAAAGAATACGAGCGACGGAGTAAAGCTATACGGTTTAAATTTTGTAGGCATCTTGACTCTAAAGTTCAACGGAGGGTTTGTACATACGCCCTTCTTTGCTACTGTTACAGGTCTTTTTAGACGGATTGATGATAACTATTGTTTCAGACTTGTAATATTTGGAACTTCTTTAAAGATCAAGTTCGTTATCGCTGTCCGTCTTTAATCTGTTTCTGTGGGTGTTTTGACGAGTATTGCATGAATGCGAGATAGTCGTCGGGCCTCCTTCGAAAATTACTGTTGAATACTTGTTTCAATAGTAATCGATTATGGAACTTTATTGTTGTTTTTCTGCAAATGCGTTATCCTATATCTGGTGGTTTTATGACGTTAAAAATGAATGACAGTGGTTTGGGCAGTTATTTCGAAGTTCTTTAGTTTGCCCTGATTTTCTTTGATGATTTAAATTAGGGTTTTCCGACCTATTAACTAATAATGATAGAATCTTGTCC

Ace file of the UniGene sp_v2.0_unigene24354 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L30 n=1 Tax=Wolffia arrhiza RepID=D1MI90_WOLAR	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	60s ribosomal protein l30	-	-	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glyoxalase/fosfomycin resistance/dioxygenase	IPR004360	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ48

Fln msg:

Fln protein: MAQENAAAVAENGKGNGAVAKLPTFSILKPHLIVEAPHAADAISFYKRVFGAEEIAKSHHPKRKADQELPLILHAHLKFGAAEVMVCDETEEAGAEVKSPVALKGTSVILHLETDDVDAAVKLAVDAGATVTEEVAERPWGQRYGKVKDPYGFVWSFATTIKESAVAEDDAQA*

Protein Length: 175

Fln nts: GTGTTGACTAATAATTAGAAATCATTTTTGTGATTTAACAGAATAACCAGAATCAAGACGAATGAATTCTGTAAAAATCAATGACCTGAAACagTtcagTtTGGTATTCTAACAGCTAATTCAATTATTTTGCATTAAATCAAAATGAATATCTTTCACAGGAGACAATTGCATAGAAAGGAACCTTTCCCCAACATTGTGCAGCAATTAATACACTCCCAAACATAGAACATCAATCTAAACTAAACTCTAAACTCTAGTTTCAACTGAGTTCTCTGCCTCTCAGTATAAATTAAACTCTCCGTTGCCTCTGAGAATTTCTACCCACTAGTTTGCTACTACCTTCTCAAAAAATTGGAACAATGTCAGAAAATGACAATTCTCTTGCTAAACCATCCCAGATGCTCTCACTGATCTCCTGAGACCGTCTTAATAATATCAGAATCACCTGGATCCATAATGCTAAGACAGCACACACGGTAATACTTGCCACAGGCTGTTCCCAGATCAACATTGTTTCCATTGAAATGATGCACTCCAACCTTAGCAAGCATAGCATAATACTCTATTTCTGATCTACGAAGAGGAGGGCAGTTATTTGCAATGATAATAAATTTTCCTTTGTTAGTCCTTATAGACTTGATGGTAGTCTTGTAACCCAGTGTATACTTGCCACTCTTCATGACAAGCGCCAATCTGCTGTTGATATTCTCATGAGCCTTTTTAGTTTTCTTTGTGGCCACCATTGTGCCTGTTGCCTGCAATAATACGCTCGCCTCGCCTCGCCTCGCCTCGCCCCGGCCGCACTAAGGGTTTCTGAGATACGTGTTCGAGTCTGACCGGCTACGTTTACGCTTTCTTTCAGTAAGAGGAGTGTTCTGTATTTGTGAGTGCGAGCGAGAAA_-_ATGGCTCAAGAGAATGCGGCGGCTGTGGCAGAGAACGGGAAGGGAAATGGTGCTGTGGCTAAGCTGCCGACGTTCTCTATTCTGAAACCCCATTTGATTGTGGAGGCTCCGCATGCTGCGGACGCCATAAGTTTCTATAAGCGCGTGTTTGGGGCTGAAGAAATTGCGAAGTCTCATCATCCCAAGCGTAAGGCTGACCAAGAGCTCCCTCTCATCCTTCATGCCCATTTGAAGTTCGGTGCTGCCGAGGTTATGGTCTGTGATGAGACCGAAGAGGCCGGTGCAGAGGTGAAATCGCCGGTGGCCCTTAAGGGCACCTCAGTGATTCTCCATTTGGAGACGGACGACGTTGATGCGGCAGTTAAACTTGCGGTGGACGCCGGGGCAACTGTTACTGAAGAGGTTGCGGAACGTCCTTGGGGTCAACGATACGGAAAGGTGAAGGATCCCTATGGTTTTGTATGGAGTTTCGCTACCACCATTAAAGAGTCTGCCGTAGCCGAGGACGACGCGCAAGCTTAA___GCGTAGGCTTAACTTCTGCGTATTTTGCGTCTAACCTTTTTTCTTGACCCTTCTCCGTCTGAACTCGTAATTTGAAAGAATACGAGCGACGGAGTAAAGCTATACGGTTTAAATTTTGTAGGCATCTTGACTCTAAAGTTCAACGGAGGGTTTGTACATACGCCCTTCTTTGCTACTGTTACAGGTCTTTTTAGACGGATTGATGATAACTATTGTTTCAGACTTGTAATATTTGGAACTTCTTTAAAGATCAAGTTCGTTATCGCTGTCCGTCTTTAATCTGTTTCTGTGGGTGTTTTGACGAGTATTGCATGAATGCGAGATAGTCGTCGGGCCTCCTTCGAAAATTACTGTTGAATACTTGTTTCAATAGTAATCGATTATGGAACTTTATTGTTGTTTTTCTGCAAATGCGTTATCCTATATCTGGTGGTTTTATGACGTTAAAAATGAATGACAGTGGTTTGGGCAGTTATTTCGAAGTTCTTTAGTTTGCCCTGATTTTCTTTGATGATTTAAATTAGGGTTTTCCGACCTATTAACTAATAATGATAGAATCTTGTCC

Fln Alignment:

Contig24354___MAQENAAAVAENGKGNGAVAKLPTFSILKPHLIVEAPHAADAISFYKRVFGAEEIAKSHHPKRKADQELPLILHAHLKFGAAEVMVCDETEEAGAEVKSPVALKGTSVILHLETXXXXXXXXXXXXAGATVTEEVAERPWGQRYGKVKDPYGFVWSFATTIKE
A9NQ48_______________MSQENVPAVAENGKGNGAAAKLPTFSTLKPHLIVEAPHAADAISFYKRVFGAEEIAKSHHPKRKADQELPLILHAHLKFGSAEVMVCDEAEEAGADVKSPVALKGTSVILHLETDDVEVAFKRAVDAGATVTEEISERSWGQRYGKVKDPYGFVWSLATPIKE

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
611	25		75		0.996473
617	50		50		1.0
710		14	85		0.993533
740	71		28		1.0
885		10		90	0.90298
897	10			90	0.90298
1048		0		97	0.999998
1157	92	1	5		1.0
1158		94		5	1.0
1160	0	94		5	1.0
1161		6	93		1.0
1162	93	6			1.0
1163	93	0		6	1.0
1165	93			5	1.0
1166		92		7	1.0
1167	91	0	7		1.0
1168	91	0		6	1.0
1169	7	92			1.0
1170	70	19		6	1.0
1171		26	70		1.0
1172		90		9	1.0
1173	2	90			0.999998
1174	75	24			1.0
1175		23	25	51	1.0
1176	90	10			0.90298
1178	90			10	0.90298
1214	90			10	0.90298
1846	95			4	0.999981
1861	77		20		1.0
1878	1	4		93	0.999928
1881			6	93	1.0
1882	92	7			1.0
1890	88			11	0.923564
1891	60	40			1.0
1893	50	50			1.0
1894	33	66			0.997452
1895	33	66			0.997452
1896	33			66	0.997452
1898	33			66	0.997452
1899	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1195	1220	GGCGA GGCGA GGCGA GGCGA GGCGA G	26

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain