SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24254

Length: 1205 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene24254

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen major allergen No.121 isoform 1 n=1 Tax=Cryptomeria japonica RepID=Q588C0_CRYJA	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	brassinosteroid-regulated protein bru1	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AED5

Fln msg:

Fln protein: MDTPLHLLFLLLASSAALASANFYNDVDITWGNDRAKIIDNGQQLQLTLDRSSGCGIQSKQEYLFAKIDIQIKLVPGNSAGTVTTFYLSSQGPKHDEIDFEFLGNLSGDPYILHTNVFAQGLGGREQQFYLWFDPTLDFHTYSVLWTSNQIIFSVDGSPIRVFKNRETELGKVDSNYHYPKSQAMSVYSSLWNADDWATRGGLVKTDWTKAPFVASFRNFSAATASSFDAAAEEAALESNQEQRLEWVRKNYMIYDYCGDTKRFPQGPPPECK*

Protein Length: 275

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTACCATCAACAGCGACAATTTATCTCTTCTCTCGTTTCTGGAACTGCTGCTCTGCATCACAAACTCTTTTCCCAATCCCTAATCGACATCGACATCGAC_-_ATGGACACACCTCTTCACCTCCTCTTTCTTTTATTGGCCTCCTCGGCAGCTCTTGCTTCTGCAAATTTCTACAATGATGTCGACATTACATGGGGTAATGATCGTGCTAAAATCATTGACAATGGACAACAGTTGCAGCTTACGCTTGACCGCTCTTCAGGTTGTGGTATTCAATCCAAGCAAGAGTATCTATTTGCCAAGATTGATATCCAAATCAAGTTGGTACCGGGCAACTCTGCAGGCACAGTCACTACTTTTTATCTATCATCTCAAGGTCCCAAACACGACGAAATAGACTTCGAATTTCTGGGCAACCTGTCCGGAGATCCTTATATTTTGCACACTAATGTCTTTGCTCAAGGCCTTGGTGGGCGTGAGCAGCAATTTTACTTGTGGTTCGACCCAACCCTGGATTTCCACACTTACTCCGTGCTCTGGACATCAAACCAAATTATATTTTCTGTAGACGGGAGTCCTATTCGAGTGTTTAAGAACAGGGAGACAGAGTTGGGTAAAGTGGATAGCAATTATCATTATCCCAAGAGCCAAGCAATGAGCGTCTACTCCAGCCTTTGGAATGCAGATGATTGGGCAACCAGAGGTGGGCTTGTGAAGACCGATTGGACTAAAGCGCCTTTTGTTGCATCCTTCCGCAATTTCAGTGCTGCTACTGCTTCTTCTTTTGACGCCGCTGCAGAGGAGGCTGCTTTGGAATCGAACCAAGAGCAGAGGCTGGAGTGGGTGAGGAAGAACTACATGATCTACGATTACTGTGGAGACACCAAAAGATTCCCACAGGGACCACCTCCCGAATGCAAATGA___ACCCTCAATTCAATTCCATTCCATTGAATTCAGAGAATGAATTCTTCTGGATACCTGACCCTTCCACCCATTCTTTCCTATTACATGATCTATTCTTTCATTCTTTTTCAGACACACAGAAAAAGAAACTTTCAATTATTCTTTCCTATTACATCTATTCTTTCATTCTTTGTCAGTTTCTGGCAAACAGAAACGCATGTAACACAATCAATTCATTTTGGGTACTGGTAATACAAAATCGAGCTCGAGATCTTTCG

Fln Alignment:

Contig24254___IDMDTPXXXXXXXXXXXXXXXXXNFYNDVDITWGNDRAKIIDNGQQLQLTLDRSSGCGIQSKQEYLFAKIDIQIKLVPGNSAGTVTTFYLSSQGPKHDEIDFEFLGNLSGDPYILHTNVFAQGLGGREQQFYLWFDPTLDFHTYSVLWTSNQIIFSVDGSPIRVFKNRETELGKVDSNYHYPKSQAMSVYSSLWNADDWATRGGLVKTDWTKAPFVASFRNFXXXXXXXXXXXXXXXXXXXXXXQRLEWVRKNYMIYDYCGDTKRFPQGPPPECK
D5AED5_______________MDMYTPFLLLFLLLTFSAALVSSNFYSDFDITWGDDRAKILDNGQQLQLTLDRTSGCGIQSKQEYLFAKIDMQIKLIPGNSAGTVTTYYLSSQGPKHDEIDFEFLGNLSGDPYIMHTNVFAQGLGNREQQFYLWFDPTLDFHTYSVLWTSNQIIFSVDGTPVRVFKNRETELGNVDTNYHYPKNQAMRIYSTLWNADDWATRGGLVKTDWTKAPFVASFRNF-NAATSSSSDSAAEEALDSNQEQRLQWVRKNYMIYNYCADTKRFPQGLPPECK

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
24	66	33			0.997452
25	66		33		0.997452
28	33		33		0.997753
30			33	33	0.997753
36		66		33	0.997452
37	66		33		0.997452
38	66		33		0.997452
40	66			33	0.997452
42		66		33	0.997452
43		33	66		0.997452
46	66	33			0.997452
76		85		14	0.993533
77			14	85	0.993533
81		85	14		0.993533
82		42		57	1.0
88	87			12	0.992554
272			60	40	1.0
287	70			30	1.0
295			90	10	0.90298
323		10		90	0.90298
374	80			20	0.995493
377		80	20		0.995493
417			80	20	0.995493
418	80			20	0.995493
419	80	20			0.995493
420	80		20		0.995493
471	75			25	0.996473
473			25	75	0.996473
474	75	25			0.996473
878			70	30	1.0
929	90		10		0.90298
932	30		70		1.0
984	30	70			1.0
1011		66		33	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
109	128	ATCGAC ATCGAC ATCGAC AT	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain