SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23923

Length: 968 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene23923 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	small heat-shock protein [Funaria hygrometrica]	-	-	3.0e-37	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	protein	-	-	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp20	IPR002068	-	-
Sma3	Peptidase S24/S26A/S26B/S26C, beta-ribbon domain	IPR011056	-	-
Sma3	Peptidase S24/S26A/S26B	IPR019759	-	-

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
243	40	60			1.0
289	30		70		1.0
371		11	88		0.923564
440	90			10	0.90298
509			88	11	0.923564
524	11	88			0.923564
533	12		87		0.992554
542	28		71		1.0
583	20		80		0.995493
674	75	25			0.996473
675	75	25			0.996473
676	75	25			0.996473
677	20		80		0.995493
705		25		75	0.996473
790		60		40	1.0
807	80	20			0.995493
810			20	80	0.995493
811		20		80	0.995493
812	80	20			0.995493
819		20		80	0.995493
820	20		80		0.995493
824		20		80	0.995493
898	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain