SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23920

Length: 624 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene23920

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	target of AVRB operation1 protein [Arabidopsis thaliana] dbj\|BAB09158.1\| disease resistance protein-like [Arabidopsis thaliana] gb\|AED95118.1\| target of AVRB operation1 protein [Arabidopsis thaliana]	-	-	7.0e-15	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	protein	-	-	2.32162e-35	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	2.32162e-35	66%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
94		60	40		1.0
95		40	60		1.0
105		40	60		1.0
108	60		40		1.0
110		60	40		1.0
120	60	40			1.0
143		60		40	1.0
171	60			40	1.0
172	40		60		1.0
179		40		60	1.0
196	60		40		1.0
215		60	40		1.0
216		40		60	1.0
223	60		40		1.0
240		60	40		1.0
305			40	60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
94		60	40		1.0
95		40	60		1.0
105		40	60		1.0
108	60		40		1.0
110		60	40		1.0
120	60	40			1.0
143		60		40	1.0
171	60			40	1.0
172	40		60		1.0
179		40		60	1.0
196	60		40		1.0
215		60	40		1.0
216		40		60	1.0
223	60		40		1.0
240		60	40		1.0
305			40	60	1.0

Position	A %	C %	G %	T %	Probability
94		60	40		1.0
95		40	60		1.0
105		40	60		1.0
108	60		40		1.0
110		60	40		1.0
120	60	40			1.0
143		60		40	1.0
171	60			40	1.0
172	40		60		1.0
179		40		60	1.0
196	60		40		1.0
215		60	40		1.0
216		40		60	1.0
223	60		40		1.0
240		60	40		1.0
305			40	60	1.0

Position	A %	C %	G %	T %	Probability
94		60	40		1.0
95		40	60		1.0
105		40	60		1.0
108	60		40		1.0
110		60	40		1.0
120	60	40			1.0
143		60		40	1.0
171	60			40	1.0
172	40		60		1.0
179		40		60	1.0
196	60		40		1.0
215		60	40		1.0
216		40		60	1.0
223	60		40		1.0
240		60	40		1.0
305			40	60	1.0