SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23577

Length: 2040 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene23577
CGTCGTGACCTTGGCTGTCACTCAATTCGAGATAACAGTGTTCGGTCGTTAGCTATTGTGCGATAGAAGAGAATCGGGATTTCGTATTTTTCGAGCTGTACAGGTGGTGATGGCTTCGACAGCAATGATGCAGAGAGCCGCAGGCACAAGCAAGTTAAGATATCTGACAGCCATTATCAAGGTAAGAGAGACGGGACTCCGGTATAATTATACCCATGTTCAGTCTTTCAGGTTTCTGAGCTCCAGGACATGCAACGAAGCCCAGTCTTTCATTGGGGTTAGGAGCAAATACATATTTGTTAAACCCTTCAGCACCTCTGAAAATCCAGTGAGCCAAACTCCAAGCTATTCCAGAGGTCAGGTGGGGGGTTCTTACAGCAGAGGTACCGGGGCAACTAGTGCGGTTATTGAGGATTTGAGGATTGCATCCAAGGAAGGGAAGCTGAATGAAGCCATGGAGCTTTTCAGAAACATACAACAGCAAGGTATTCCTATGGATTCCATCAGTTATGTTTGCATTCTGCAATGTTGCGCGGATTCGAAAGCGCTGGAAGAGGGTAGGAAGGTGCATGAATACATGGTTGGGAGTGGGTTTAGGCCTGATGTATTGGTGGATAATAAAATCATTGAGATGTATGGCAAATGTGGATGCGTGCAGGAAGCGCGTCAAGTGTTTGACAAAATGTCTGAGCGAGATTGTTCTTCCTGGAATTATATGATAGCAGGGTTGTCCTACAATGGCCTTGCAGAGGAGGCGATTCAATTGTTTAGCCAGATGAAGGAAGCTGGGGAGAGACCGAATGGAAACACTTTTCTAGGGGTTCTTTCAGCATGCATTCGATTAGGTTTGGTGGATGAAGGCCTTCGGTATTATGAAGCGATGGACAAAGAATATGGACTGCTGTATTCGATGCAACACTATGTGTGCATGGTCGATCTTTTTAGTCGGGCTGGACGACTGGAGGAAGCGGAGGAGTTTATCAATAAGATGCCAACAAAGCCGAGTGTTGCAGTTTGGGAGACCTTGCGCAATGCTTGCAAGAGTCGTGGGGATGAAGTGATGGAAAAGCGGGCTGCCGAGAAGATTAGTGAGATAGAGCCCAATAGACTTGTGCCAAGATCTAACTTAAGTGGAGGTGGTGCAGCTGGCAGATGGGCAAATAGAAACAATGGGGTGAATAGAAGCAGTGGCAGAGGCATAGGAATGGACACCGACATTATGAAATCCCCAACACCAAAAGCAAGCACAGTGCACGAGTATCGAGCCGGGACCTTATCTCATCCTCAGAGGGAGGAGATTTATGCAAAATTGGAGGGCTTAGCTGGACAGATGAAGGAAGCAGGGTATGTGCCTGACACGAAGTATGTGCTGCATGACGTGGATGAGGCGCAGAAAGAAATAGCTCTGATGCATCATAGTGAGAGGTTGGCCATAGCTTATGGGCTTATTAGCACCCCACCTGGAACAACTTTGAGAATAATTAAAAACCTTCGAGTGTGTGGTGATTGCCACAACGCTATCAAGATCATGTCCAAGATTGTTCAGCGAGAACTTATTGTACGAGATGCAAAGCGATTTCATCATTTTAAGGATGGAAAGTGCTCCTGTGGAGATTATTGGTGATGCTGATTTACTTCTGCCTGGAAGGAACTTTGGAGTAGTCAGTTGTGCATCTCAATGTGTTAAGATCTCTATGTGTACCAGTTCATCTAAAAAATCTCTCTTGCAATCTAGGCAATAAGGAGGATGGCATATTTATCAGCAAGTCAAGGCCAAAGGGCACTGACAACTATTCTATTCCACATGGCATGCTTAGCAGTTTGACAAAAATACATAGGGACATCTGTAGGACAGGAGTGGTGCAGCCTGCCCTTCACTGCTAGAACCAGCATGGATCCATCCTGATCTCTAATATTTTAAAAGCAAAGAAGGATATAAACTTGAGGTGTAGATCTCATTGTTCTTTGATCCTTCTAGGCGTGTAACAGAGCCAAGGTTGAAGCCGGATCTATGCCAGTCTATTCATGCTTGTTGTTTAG

Ace file of the UniGene sp_v2.0_unigene23577 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative selenium-binding protein, related n=1 Tax=Solanum demissum RepID=Q6F2D0_SOLDE	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	protein	-	-	61%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: your sequence is longer than subject: 505 - 370

Fln protein: MASTAMMQRAAGTSKLRYLTAIIKVRETGLRYNYTHVQSFRFLSSRTCNEAQSFIGVRSKYIFVKPFSTSENPVSQTPSYSRGQVGGSYSRGTGATSAVIEDLRIASKEGKLNEAMELFRNIQQQGIPMDSISYVCILQCCADSKALEEGRKVHEYMVGSGFRPDVLVDNKIIEMYGKCGCVQEARQVFDKMSERDCSSWNYMIAGLSYNGLAEEAIQLFSQMKEAGERPNGNTFLGVLSACIRLGLVDEGLRYYEAMDKEYGLLYSMQHYVCMVDLFSRAGRLEEAEEFINKMPTKPSVAVWETLRNACKSRGDEVMEKRAAEKISEIEPNRLVPRSNLSGGGAAGRWANRNNGVNRSSGRGIGMDTDIMKSPTPKASTVHEYRAGTLSHPQREEIYAKLEGLAGQMKEAGYVPDTKYVLHDVDEAQKEIALMHHSERLAIAYGLISTPPGTTLRIIKNLRVCGDCHNAIKIMSKIVQRELIVRDAKRFHHFKDGKCSCGDYW*

Protein Length: 506

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCGAGATAACAGTGTTCGGTCGTTAGCTATTGTGCGATAGAAGAGAATCGGGATTTCGTATTTTTCGAGCTGTACAGGTGGTG_-_ATGGCTTCGACAGCAATGATGCAGAGAGCCGCAGGCACAAGCAAGTTAAGATATCTGACAGCCATTATCAAGGTAAGAGAGACGGGACTCCGGTATAATTATACCCATGTTCAGTCTTTCAGGTTTCTGAGCTCCAGGACATGCAACGAAGCCCAGTCTTTCATTGGGGTTAGGAGCAAATACATATTTGTTAAACCCTTCAGCACCTCTGAAAATCCAGTGAGCCAAACTCCAAGCTATTCCAGAGGTCAGGTGGGGGGTTCTTACAGCAGAGGTACCGGGGCAACTAGTGCGGTTATTGAGGATTTGAGGATTGCATCCAAGGAAGGGAAGCTGAATGAAGCCATGGAGCTTTTCAGAAACATACAACAGCAAGGTATTCCTATGGATTCCATCAGTTATGTTTGCATTCTGCAATGTTGCGCGGATTCGAAAGCGCTGGAAGAGGGTAGGAAGGTGCATGAATACATGGTTGGGAGTGGGTTTAGGCCTGATGTATTGGTGGATAATAAAATCATTGAGATGTATGGCAAATGTGGATGCGTGCAGGAAGCGCGTCAAGTGTTTGACAAAATGTCTGAGCGAGATTGTTCTTCCTGGAATTATATGATAGCAGGGTTGTCCTACAATGGCCTTGCAGAGGAGGCGATTCAATTGTTTAGCCAGATGAAGGAAGCTGGGGAGAGACCGAATGGAAACACTTTTCTAGGGGTTCTTTCAGCATGCATTCGATTAGGTTTGGTGGATGAAGGCCTTCGGTATTATGAAGCGATGGACAAAGAATATGGACTGCTGTATTCGATGCAACACTATGTGTGCATGGTCGATCTTTTTAGTCGGGCTGGACGACTGGAGGAAGCGGAGGAGTTTATCAATAAGATGCCAACAAAGCCGAGTGTTGCAGTTTGGGAGACCTTGCGCAATGCTTGCAAGAGTCGTGGGGATGAAGTGATGGAAAAGCGGGCTGCCGAGAAGATTAGTGAGATAGAGCCCAATAGACTTGTGCCAAGATCTAACTTAAGTGGAGGTGGTGCAGCTGGCAGATGGGCAAATAGAAACAATGGGGTGAATAGAAGCAGTGGCAGAGGCATAGGAATGGACACCGACATTATGAAATCCCCAACACCAAAAGCAAGCACAGTGCACGAGTATCGAGCCGGGACCTTATCTCATCCTCAGAGGGAGGAGATTTATGCAAAATTGGAGGGCTTAGCTGGACAGATGAAGGAAGCAGGGTATGTGCCTGACACGAAGTATGTGCTGCATGACGTGGATGAGGCGCAGAAAGAAATAGCTCTGATGCATCATAGTGAGAGGTTGGCCATAGCTTATGGGCTTATTAGCACCCCACCTGGAACAACTTTGAGAATAATTAAAAACCTTCGAGTGTGTGGTGATTGCCACAACGCTATCAAGATCATGTCCAAGATTGTTCAGCGAGAACTTATTGTACGAGATGCAAAGCGATTTCATCATTTTAAGGATGGAAAGTGCTCCTGTGGAGATTATTGGTGA___TGCTGATTTACTTCTGCCTGGAAGGAACTTTGGAGTAGTCAGTTGTGCATCTCAATGTGTTAAGATCTCTATGTGTACCAGTTCATCTAAAAAATCTCTCTTGCAATCTAGGCAATAAGGAGGATGGCATATTTATCAGCAAGTCAAGGCCAAAGGGCACTGACAACTATTCTATTCCACATGGCATGCTTAGCAGTTTGACAAAAATACATAGGGACATCTGTAGGACAGGAGTGGTGCAGCCTGCCCTTCACTGCTAGAACCAGCATGGATCCATCCTGATCTCTAATATTTTAAAAGCAAAGAAGGATATAAACTTGAGGTGTAGATCTCATTGTTCTTTGATCCTTCTAGGCGTGTAACAGAGCCAAGGTTGAAGCCGGATCTATGCCAGTCTATTCATGCTTGTTGTTTAG

Fln Alignment:

Contig23577___ILQCCADSKALEEGRKVHEYMVGSGFRPDVLVDNKIIEMYGKCGCVQEARQVFDKMSERDCSSWNYMIAGLSYNGLAEEAIQLFSQMKEAGERPNGNTFLGVLSACIRLGLVDEGLRYYEAMDKEYGLLYSMQHYVCMVDLFSRAGRLEEAEEFINKMPTKPSVAVWETLRNACKSRGDEVMEKRAAEKISEIEPNR---LVPRSNLSXXXXXXXXXXXXXXXXXXXXXXXGMDTDIMKSP----TPKASTVHEYRAGTLSHPQREEIYAKLEGLAGQMKEAGYVPDTKYVLHDVDEAQKEIALMHHSERLAIAYGLISTPPGTTLRIIKNLRVCGDCHNAIKIMSKIVQRELIVRDAKRFHHFKDGKCSCGDYW
A9P0W0_______________ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTYVLLSNI--------YAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGHHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFKDGQCSCGDYW

SNPs (tot: 69)

Position	A %	C %	G %	T %	Probability
299	16			83	0.994512
316	16			83	0.994512
329	83		16		0.994512
344		85	14		0.993533
345	85	14			0.993533
346		16		83	0.994512
348	12		75		0.975346
350			87	12	0.992554
351	75		25		1.0
354	12	12		75	0.975346
355		12		87	0.992554
356	87		12		0.992554
358		87		12	0.992554
359	75		25		1.0
449		80	20		0.995493
450	20	80			0.995493
451			20	80	0.995493
453	80		20		0.995493
455	80	20			0.995493
459	80	20			0.995493
460		20		80	0.995493
461	20	20	60		0.99255
462	80	20			0.995493
463	60	20	20		0.99255
464	80		20		0.995493
467	25		75		0.996473
469			25	75	0.996473
470	25			75	0.996473
471		25		75	0.996473
1101	80		20		0.999996
1401	37		62		1.0
1432		80		20	0.995493
1443	20		80		0.995493
1451		80		20	0.995493
1452		80	20		0.995493
1454		80	20		0.995493
1456		40	20	40	1.0
1457	20	80			0.995493
1458	20	80			0.995493
1460	80		20		0.995493
1464	25	25		50	0.995533
1465	25		75		0.996473
1467	25		75		0.996473
1472		25		75	0.996473
1477		75	25		0.996473
1507		66		33	0.997452
1534	33		66		0.997452
1631			25	75	0.996473
1633	75		25		0.996473
1679	66		33		0.997452
1692	66	33			0.997452
1712	66	33			0.997452
1717	33		66		0.997452
1859	66		33		0.997452
1896	33		66		0.997452
1940		80		20	0.995493
1944	80			20	0.995493
1945		80	20		0.995493
1946	80			20	0.995493
1947	20		80		0.995493
2019	25			75	0.996473
2020	25		75		0.996473
2021	75			25	0.996473
2023		25		75	0.996473
2026	25	75			0.996473
2031		75		25	0.996473
2032	75			25	0.996473
2038		25		75	0.996473
2041	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain