SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23510

Length: 1117 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene23510 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Caffeoyl-CoA O-methyltransferase n=8 Tax=Pinaceae RepID=CAMT_PINTA	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	caffeoyl o-methyltransferase	-	-	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	O-methyltransferase, family 3	IPR002935	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD15

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 235 - 251

Fln protein: MDHKMGHKGILQSDALYQYILETSVYPREPEPLKELRQATAKVPWNFMAIPPDEGQFLSLLLKLMNAKNTIEIGVYTGYSLLSTALALPDDGKIIAMDPDRATYEIGLPIIEKAGVAHKIDFREGPALLFLDEMIKNVGMHGSFDFAFVDADKANYLNYHERLIDLVKIGGVIAYDNTLWKGSVAAPPEDEMNEGFRKVRVFTLEVNKVLAADPRVEIAQIPVADGITLCRRLS*

Protein Length: 236

Fln nts: ATGGTAGAGCCTAGTGTGCATCTCAGAAATGGAAGACAAAGGCTACAAGGTAATCTTCAACGATGGCAATATTTTCTTCTTGTTCTCGCATTTGTGGATCTGCTATGGTTTTCGGTCAGCTATAGTAGAGCTGAAGGCGGACACATCCCAAGTACAGGAGCAGAGTAAGGTCACAAA_-_ATGGACCATAAAATGGGCCATAAAGGTATTTTGCAGAGTGATGCGCTTTATCAGTATATATTGGAAACGAGCGTGTATCCTCGTGAACCCGAGCCACTGAAAGAGCTTCGGCAGGCGACTGCAAAAGTTCCCTGGAACTTTATGGCCATTCCTCCCGATGAGGGTCAATTTCTGAGCCTTCTGCTGAAGCTAATGAATGCCAAGAACACCATCGAGATTGGGGTGTACACCGGGTACTCACTTCTGAGCACAGCCCTTGCTTTACCTGATGACGGGAAGATAATAGCGATGGATCCTGATAGAGCGACTTATGAGATCGGGTTACCTATCATTGAAAAAGCTGGAGTTGCCCACAAAATTGACTTCAGAGAGGGCCCTGCTCTGCTATTTTTGGATGAAATGATTAAAAATGTTGGGATGCACGGCTCGTTTGATTTTGCGTTTGTGGACGCCGACAAAGCGAACTATCTGAACTACCATGAGCGGCTGATCGATCTGGTGAAGATCGGGGGTGTGATTGCGTATGACAATACTCTGTGGAAAGGAAGCGTTGCGGCTCCCCCCGAAGATGAGATGAACGAAGGGTTCAGAAAAGTGAGAGTTTTCACATTGGAAGTGAACAAGGTGCTTGCCGCTGATCCCCGCGTCGAGATTGCCCAAATCCCAGTCGCCGATGGAATCACGCTGTGCAGGCGTCTCTCCTGAAGTTTATTCAGCGATCAGTTCTCGGTATGCTGTGGATGTGAGCCGTGACAGTCAGAAATTATATCCATAGAAATTGTTTTCTAAATTTTGTGGTATAATTTGTGATAATTTATTTCCTCAGTGCGGGAGGAAATAAATCATTTGAAAACCAGTCTTATTATTAATTTTGGCTTTTGCAATTAGAATTGCAGTGGTTTTACACGTTGTTCAAATCTCCGGAAGCATTAGTGTAAGA

Fln Alignment:

Contig23510___MDHKMGHKGILQSDALYQYILETSVYPREPEPLKELRQATAKVPWNFMAIPPDEGQFLSLLLKLMNAKNTIEIGVYTGYSLLSTALALPDDGKIIAMDPDRATYEIGLPIIEKAGVAHKIDFREGPALLFLDEMIKNVGMHGSFDFAFVDADKANYLNYHERLIDLVKIGGVIAYDNTLWKGSVAAPPEDEMNEGFRKVRVFTLEVNKVLAADPRVEIAQIPVADGITLCRRLS
D5AD15_______________LDHQMDNKSLLQSDALYQYILETNVYPREPEPLKELRQVTAKVPWNFMAIPPDEGQFLSLLLKLMNAKNTIEIGVYTGYSLLSTALALPEDGKIIAMDTDRRTYEIGRPIIEKAGVAHKIDFREGPALPFLDEMLKNGGMQGSFDFAFVDADKGNYLNYHKRLIDLVKIGGVIAYDNTLWKGTVASPPEVHMNEGFRNVRLFTLEVNKALAADPRIEIAQIPVADGITLCRRLS

SNPs (tot: 3)

Position	A %	C %	G %	Probability
556	80		20	0.995493
620	25		75	0.996473
773	50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain