SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23390

Length: 2073 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene23390
CGTCGTGACCTTGGCTGTCACTCAAGAGGCAGATGAGAAGAGCCAGGGTTGCCTTCGCTATTCTTTCGTTGGAGGCACTATGGCTAAGTTAGTGGAGACCGTTATTAATATGAAATTTGTTCTTTTCTTAATAATGTTTATGTTTGTAATGTCCATGGCTTCGGCTTCAGCTGCAGCAGAGCGGATGGTGACCATGGTCGGGGCTTGGCTTGATGTAAGCAATATGAAATCTTTCCGGGCTGCTCTATACCTAGCGGCAGCATTATTTTTGTCTAAAATACTTGTATTTTCTAGGCGTAGAGGGCCATATACGTTGCCTCCGGGTCCTATTCAATGGCCCCTTGTTGGCTCCCTGTTCTCAGTGGGTTTTGAATACAGGCATCGCACTTATGCTACACTTTCTCGCAAGTACGGGCCAGTCATGCATTTCCGCCTTGGGGGTGCAAATGTTCTCGTTGTTTCCAGTCCAGAGCTTGCCATGGAAGTCCTTAAAACTAAGGACACCGAGTGGGCGTCTAGACCACCCACACCTGCTGGAAAATACATTGGGGTTGATTTCCACGCCCTGGATTTCGCACCCAATGGCCCTCACTGGCGCCACCTGAGGAAAATATGCGCTACCCACATATTTTCTCCCGCAAGATTAAGGGCGCAGGGTTATATCCGAAGAGAGGAAGTCCTCCGCATTGTGGACCACGTCTTCTCACAATCCCAAAGAGCCGTAGGTTTAGGTTTAGGAGAACCCATTGATCTGAGAAGTGTGAGTTATTCTTTAATGGACAATATCATTTCCCGAGTGTTGTTCGGTAACAAGTACACCGAACCCGACCATCCTATTGCCAAGGTCATGCACTCCTTCAGGGATGACGTACAGGAGGCCATGATTCTGGCTGGCGCCTTTGCTATTAGTGATGGCCTTATTCCTGCTCTGGGCTGGCTAGATTTGGCGGGCCACCTTCGACATCGAAGAATCAAAAGAATAAGCCAAAGATTAGAGAGAGTTTACAAGCTTATTATTGACGACCATCGGCGTGACTTGGAAAATAAGAACGACATCAGCGAGGAGACCAAAGATTTTGTGCATATTTTGCTATCTCTTCAAGGGGAAGACAAGTTATCAGACAAATCTCTTATGGGACTAATAATGGATGTCTTACCATTTGGCAAGGATGTGGTGGCGGCTGTGCTTGAATTTGCGATGGCAGAGCTGATTCAAAACCAGAGCATTTTAAGAAAACTGCAAGGTGAAATAGACAGAGTTGTCGGTGATGGGCGATTGTTGGATGAATCTGACATCTGCAAGATTCCATATCTGGAGTGCGTGGTGAAGGAAGCTCTTCGTCTTCATCCGCCGGCCCCGTTGACGGATCCACACTATAATGAAGAATCTGTAGATTTAGCAGGCTACAGAATTCCGCCAAAATGCATCATGTTTATTAACATATGGGCACTTGCAAACGATCCCAAATGGTGGGACGAACCCTCTGAGTTCAGACCCGAAAGATTCGAGAACGAATCAAACATGATGGGCGACTTCAGATACTTGCCCTTTTCCGCCGGGAGGAGAAAGTGTCCCGCTAGCAACTTGGCGTACCTGGCGATGCAACACGCCATAGGCGTTATGGTGCAAGCATTCGACTGGTCGCTTCCTGAGGGGCAGCTGAACATGAACATGGAGGATCAAGAATTTGGAGCCAGTTCTGCTAAGAAATACCCTCTACTTGCCCTCGCCAAACCTCGATTTGACCTCTTACGCTTGAAACCACCTGCAAACAATTAAACCATTTAAACCTTCCTCTCTTTTACGTCGTGCCTGGTTTCTTATGATCTCAATATTTCCTAATAAACTCGTATGATATGAATACACGTCATGATTTTCTTCACGTGTATCCCATACGTGCATGAATACGTTTATTAATTATTCCATGATATTTGTAATTGAAAAGTGTATTTGTAATAATGGATAACTAGCAATTGCTTCAGGCTCCAGAGGTTGGGAGGTGCAAAGGGACGCAGATAAGATTGTTAATTTGAAAAAGTTGTATTTTAGTTTTCATAATTAAGTAAATAAAA

Ace file of the UniGene sp_v2.0_unigene23390

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 monooxygenase CYP92A1 n=3 Tax=Zea mays RepID=Q8VYA9_MAIZE	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	flavonoid 3 -hydroxylase	-	-	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ07

Fln msg:

Fln protein: MAKLVETVINMKFVLFLIMFMFVMSMASASAAAERMVTMVGAWLDVSNMKSFRAALYLAAALFLSKILVFSRRRGPYTLPPGPIQWPLVGSLFSVGFEYRHRTYATLSRKYGPVMHFRLGGANVLVVSSPELAMEVLKTKDTEWASRPPTPAGKYIGVDFHALDFAPNGPHWRHLRKICATHIFSPARLRAQGYIRREEVLRIVDHVFSQSQRAVGLGLGEPIDLRSVSYSLMDNIISRVLFGNKYTEPDHPIAKVMHSFRDDVQEAMILAGAFAISDGLIPALGWLDLAGHLRHRRIKRISQRLERVYKLIIDDHRRDLENKNDISEETKDFVHILLSLQGEDKLSDKSLMGLIMDVLPFGKDVVAAVLEFAMAELIQNQSILRKLQGEIDRVVGDGRLLDESDICKIPYLECVVKEALRLHPPAPLTDPHYNEESVDLAGYRIPPKCIMFINIWALANDPKWWDEPSEFRPERFENESNMMGDFRYLPFSAGRRKCPASNLAYLAMQHAIGVMVQAFDWSLPEGQLNMNMEDQEFGASSAKKYPLLALAKPRFDLLRLKPPANN*

Protein Length: 568

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGAGGCAGATGAGAAGAGCCAGGGTTGCCTTCGCTATTCTTTCGTTGGAGGCACT_-_ATGGCTAAGTTAGTGGAGACCGTTATTAATATGAAATTTGTTCTTTTCTTAATAATGTTTATGTTTGTAATGTCCATGGCTTCGGCTTCAGCTGCAGCAGAGCGGATGGTGACCATGGTCGGGGCTTGGCTTGATGTAAGCAATATGAAATCTTTCCGGGCTGCTCTATACCTAGCGGCAGCATTATTTTTGTCTAAAATACTTGTATTTTCTAGGCGTAGAGGGCCATATACGTTGCCTCCGGGTCCTATTCAATGGCCCCTTGTTGGCTCCCTGTTCTCAGTGGGTTTTGAATACAGGCATCGCACTTATGCTACACTTTCTCGCAAGTACGGGCCAGTCATGCATTTCCGCCTTGGGGGTGCAAATGTTCTCGTTGTTTCCAGTCCAGAGCTTGCCATGGAAGTCCTTAAAACTAAGGACACCGAGTGGGCGTCTAGACCACCCACACCTGCTGGAAAATACATTGGGGTTGATTTCCACGCCCTGGATTTCGCACCCAATGGCCCTCACTGGCGCCACCTGAGGAAAATATGCGCTACCCACATATTTTCTCCCGCAAGATTAAGGGCGCAGGGTTATATCCGAAGAGAGGAAGTCCTCCGCATTGTGGACCACGTCTTCTCACAATCCCAAAGAGCCGTAGGTTTAGGTTTAGGAGAACCCATTGATCTGAGAAGTGTGAGTTATTCTTTAATGGACAATATCATTTCCCGAGTGTTGTTCGGTAACAAGTACACCGAACCCGACCATCCTATTGCCAAGGTCATGCACTCCTTCAGGGATGACGTACAGGAGGCCATGATTCTGGCTGGCGCCTTTGCTATTAGTGATGGCCTTATTCCTGCTCTGGGCTGGCTAGATTTGGCGGGCCACCTTCGACATCGAAGAATCAAAAGAATAAGCCAAAGATTAGAGAGAGTTTACAAGCTTATTATTGACGACCATCGGCGTGACTTGGAAAATAAGAACGACATCAGCGAGGAGACCAAAGATTTTGTGCATATTTTGCTATCTCTTCAAGGGGAAGACAAGTTATCAGACAAATCTCTTATGGGACTAATAATGGATGTCTTACCATTTGGCAAGGATGTGGTGGCGGCTGTGCTTGAATTTGCGATGGCAGAGCTGATTCAAAACCAGAGCATTTTAAGAAAACTGCAAGGTGAAATAGACAGAGTTGTCGGTGATGGGCGATTGTTGGATGAATCTGACATCTGCAAGATTCCATATCTGGAGTGCGTGGTGAAGGAAGCTCTTCGTCTTCATCCGCCGGCCCCGTTGACGGATCCACACTATAATGAAGAATCTGTAGATTTAGCAGGCTACAGAATTCCGCCAAAATGCATCATGTTTATTAACATATGGGCACTTGCAAACGATCCCAAATGGTGGGACGAACCCTCTGAGTTCAGACCCGAAAGATTCGAGAACGAATCAAACATGATGGGCGACTTCAGATACTTGCCCTTTTCCGCCGGGAGGAGAAAGTGTCCCGCTAGCAACTTGGCGTACCTGGCGATGCAACACGCCATAGGCGTTATGGTGCAAGCATTCGACTGGTCGCTTCCTGAGGGGCAGCTGAACATGAACATGGAGGATCAAGAATTTGGAGCCAGTTCTGCTAAGAAATACCCTCTACTTGCCCTCGCCAAACCTCGATTTGACCTCTTACGCTTGAAACCACCTGCAAACAATTAA___ACCATTTAAACCTTCCTCTCTTTTACGTCGTGCCTGGTTTCTTATGATCTCAATATTTCCTAATAAACTCGTATGATATGAATACACGTCATGATTTTCTTCACGTGTATCCCATACGTGCATGAATACGTTTATTAATTATTCCATGATATTTGTAATTGAAAAGTGTATTTGTAATAATGGATAACTAGCAATTGCTTCAGGCTCCAGAGGTTGGGAGGTGCAAAGGGACGCAGATAAGATTGTTAATTTGAAAAAGTTGTATTTTAGTTTTCATAATTAAGTAAATAAAA

Fln Alignment:

Contig23390___TLPPGPIQWPLVGSLFSVGFEYRHRTYATLSRKYGPVMHFRLGGANVLVVSSPELAMEVLKTKDTEWASRPPTPAGKYIGVDFHALDFAPNGPHWRHLRKICATHIFSPARLRAQGYIRREEVLRIVDHVFSQSQRAVGLGLGEPIDLRSVSYSLMDNIISRVLFGNKYTEPDHPIAKVMHSFRDDVQEAMILAGAFAISDG-LIPALGWLDLAGHLRHRRIKRISQRLERVYKLIIDDHRRDLENKNDISEETKDFVHILLSLQGEDKLSDKSLMGLIMDVLPFGKDVVAAVLEFAMAELIQNQSILRKLQGEIDRVVGDGRLLDESDICKIPYLECVVKEALRLHPPAPLTDPHYNEESVDLAGYRIPPKCIMFINIWALANDPKWWDEPSEFRPERFENESNMMGDFRYLPFSAGRRKCPASNLAYLAMQHAIGVMVQAFDWSLPEGQLNMNMEDQEFGASSAKKYPLLALAKPRFDLLRLKPPANN
C0PQ07_______________SMPPGPVRWPLVGSLLSVGFQQRHRTYARLANKYGPVMHFCIENANVIVVGSPEVALEVLKTKDAEWASRPPTLSGKYIGVDFHALDFAPNGPHWRHLRKICATHIFSPARLRAQSYIRREEVLRIVDGIFSQSQRGLGLGLGEAIDLRSVSYSLMDNIISRVLFGNKYSQSDHPIAKVMHSFRDDVQEAIILAGAFAISDGGIIPALSWIDLRGY--HGRIKRVSQRLERVYRMIIEDHKRDLE-LGEYEEEKQDFVHVLLSLQGEDRLSDKSLMGLIMDVLPFGKDVVAAVLEFAMAELIQNQSVLRKLQGEIDRVVGDDRLVDESDICKIPYLECVVKEALRLHPPAPLTDPHYNEEAVDLAGYKIPPKCIMFINIWALANDPKWWDEPSEFRPERFEAAIGGNNDFRYLPFSAGRRKCPAGNLAYVTMEHAIAVLVQAFDWSLPEGQLNINMEDEEFGASSAKKYPLLALAKPRLHFL---PPSQS

SNPs (tot: 101)

Position	A %	C %	G %	T %	Probability
114	66	16		16	0.988813
115	66		33		1.0
117		16	16	66	0.988813
119		16	83		0.994512
120	33			66	1.0
121		16		83	0.994512
125			16	83	0.994512
126			16	83	0.994512
131	83	16			0.994512
133	83	16			0.994512
199		83	16		0.994512
224	16		83		0.994512
247			20	80	1.0
248	80			20	1.0
249			20	80	1.0
254	80		20		1.0
261			80	20	1.0
264			77	4	1.0
266	77		4	4	1.0
268	4	14	4	76	1.0
348		31	68		1.0
362		66	33		1.0
431		40		60	1.0
472		92	8		0.999718
607		11		88	0.999937
609	88			11	0.999952
610		11	88		0.999952
612	88			11	0.999952
613	88		11		0.999952
615	88	11			0.999952
616		11		88	0.999952
617	88			11	0.999952
624	87			12	0.999964
626	11	88			0.999952
628	82			17	1.0
803			87	12	0.992554
805		12		87	0.992554
806	12		87		0.992554
807		12		87	0.992554
825		25	75		1.0
845		87		12	0.992554
857		87		12	0.992554
920		87	12		0.992554
923		28		71	1.0
1013			88	11	0.923564
1016		11		88	0.923564
1025		88		11	0.923564
1030	88			11	0.923564
1034		11	88		0.923564
1038		25	75		1.0
1039	75		25		1.0
1040		62		25	1.0
1043		16	83		0.994512
1045	83	16			0.994512
1063	28		71		1.0
1097	60			40	1.0
1103		40		60	1.0
1127		80		20	0.995493
1136		40		60	1.0
1143		60		40	1.0
1202	33		66		1.0
1214		33	66		0.997452
1246	88			11	0.923564
1247	88			11	0.923564
1248			88	11	0.923564
1252	88			11	0.923564
1253	88	11			0.923564
1255		11		88	0.923564
1256	88			11	0.923564
1257		11	88		0.923564
1272	11		88		0.923564
1295	12			87	0.992554
1322		25	75		1.0
1375		87	12		0.992554
1376	87			12	0.992554
1378	85		14		0.993533
1379		85		14	0.993533
1380			14	85	0.993533
1382		14		85	0.993533
1383	85	14			0.993533
1384	85			14	0.993533
1388	85		14		0.993533
1389		14	85		0.993533
1390	85			14	0.993533
1391	85		14		0.993533
1394	14			85	0.993533
1395		14	85		0.993533
1397	85	14			0.993533
1398	14		85		0.993533
1414	14		85		0.993533
1731		87		12	0.992554
1746		12		87	0.992554
1748			12	87	0.992554
1795		83	16		0.994512
1831	10		50		1.0
1846	40	60			1.0
1865			10	90	0.90298
1877	90		10		0.90298
1907		90		10	0.90298
1915		90		10	0.90298
1966	90	10			0.999898

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain