SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23357

Length: 968 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene23357 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase IIa [Nicotiana tabacum] gb\|AAD34614.1\|AF153278_1 DNA-directed RNA polymerase IIb [Nicotiana tabacum]	-	-	4.0e-25	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	dna-directed rna polymerases and iii subunit rpabc2	-	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	70%
Blast2go	DNA-directed RNA polymerase IV complex	GO:0000418	Cellular Component	70%
Blast2go		GO:0080137	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	RNA polymerase, subunit omega/K/RPABC2	IPR006110	-	-
Sma3	DNA-directed RNA polymerase, subunit K/RPABC2	IPR006111	-	-
Sma3	RNA polymerase subunit, RPB6/omega	IPR012293	-	-

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
613		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain