SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23338

Length: 1013 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene23338 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	15.9 kDa subunit of RNA polymerase II n=8 Tax=core eudicotyledons RepID=O48890_ARATH	-	-	77%
FL-Next	tr=RPB15.9; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	77%
Blast2go	kda subunit of rna polymerase ii	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase.	EC:2.7.7.6	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	89%
Blast2go	Pyrimidine metabolism	00240	89%
Blast2go	Metabolic pathways	01100	89%

Source	GOs	Term	Type	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	89%
Blast2go	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	89%
Blast2go	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	RNA polymerase II, Rpb4	IPR005574	-	-
Sma3	RNA polymerase II, Rpb4, core	IPR006590	-	-
Sma3	Protein of unknown function DUF1635	IPR012862	-	-

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
482		85	14		0.993533
484	14	14		71	0.984337
486			16	83	0.994512
487	83			16	0.994512
488		16	83		0.994512
489	16			83	0.994512
490	83	16			0.994512
541		60	40		1.0
543			40	20	1.0
545	20		40	40	1.0
547		40	20		1.0
550	40			60	1.0
551			40	60	1.0
552			40	60	1.0
555	40			60	1.0
557	20		40		1.0
770		28		71	1.0
797		7	69	23	1.0
962	12			87	0.999964

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain