SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22995

Length: 1872 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene22995

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NAM-like protein [Prunus persica]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	nac domain ipr003441	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZG8

Fln msg: W1: There is no M at the beginning,

Fln protein: VCGLALLGLGCLRLSSPASFSESHQHQQPQLPPGFRFHPTDEELVVHYLKKKASSTPLPVTIIAEIDLYKFDPWELPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSTSAGTQKVGVKKALVFYGGRPPKGIKTNWIMHEYRLADVSRPARKKGSLRLDDWVLCRIYNKKTSAEKLALEQNESSMDVPMEAIDEKEMVNQPSSTSIEHSGIEQNSPSSDLLNKMGPSPTSHNGVPPRVLPMNTNISSPNLDFFQKIITPSSAGTPKAPVQNTEFNPISSSINHPWINYDSIDLLSGLHPDSSSSKPSSSSDPISEKEEVQSSLRLETSSPEEQKPFFNFSLEGLEYPFSHLDQITLPDPYQDYFTSWTSSDLPRFYANDVHFC*

Protein Length: 402

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTCAATCACTTCTGCTTCTTCATCTCGATCCAGATTCCATTTTCATTTCAGCTTATCCTTCTGGTTCTTGCAATTCCCTTGGCCTTTAAGTTTGCGGACTGGCTTTGCTTGGCTTGGGTTGTCTGAGATTGAGTAGCCCAGCTTCCTTCTCGGAGTCGCATCAGCATCAGCAGCCACAGCTGCCTCCGGGATTTCGATTTCACCCCACAGATGAGGAGTTGGTTGTTCATTACTTGAAGAAGAAGGCATCTTCCACGCCTCTGCCTGTGACGATTATTGCAGAAATTGACCTTTACAAGTTTGATCCCTGGGAGCTACCTGAGAAGGCAACCTTTGGAGAGCAAGAATGGTATTTTTTCAGCCCAAGGGACAGGAAATACCCAAACGGGGCTAGACCTAATAGAGCTGCAACATCTGGGTACTGGAAAGCTACTGGAACGGACAAGCCTATATTAACATCTACATCAGCAGGTACACAGAAGGTGGGAGTGAAGAAGGCCCTGGTGTTCTATGGAGGCAGACCACCCAAAGGGATAAAAACCAACTGGATCATGCATGAATACCGTCTTGCTGATGTTAGCAGGCCTGCAAGAAAGAAAGGCAGCTTAAGACTGGATGATTGGGTTCTCTGTCGAATTTACAACAAAAAGACAAGTGCTGAGAAGTTAGCACTAGAGCAGAATGAAAGCTCCATGGATGTGCCAATGGAGGCCATCGATGAAAAGGAGATGGTGAATCAACCCTCCTCAACTTCAATCGAGCATAGCGGTATTGAACAGAACAGTCCATCTTCTGACCTTTTGAACAAAATGGGACCATCTCCAACAAGCCACAACGGGGTTCCCCCTCGTGTTCTGCCCATGAATACTAATATCAGTTCGCCGAACCTGGACTTCTTCCAAAAGATAATCACCCCTTCCAGTGCCGGTACCCCCAAAGCTCCAGTGCAGAATACAGAATTCAACCCAATTTCCTCCTCCATCAACCACCCATGGATAAATTACGATTCAATAGACTTATTGTCAGGATTGCATCCTGATTCCAGCAGTTCCAAGCCATCATCATCATCAGACCCCATTTCAGAGAAAGAAGAAGTTCAGAGCAGCTTAAGATTGGAAACTTCTTCACCAGAGGAGCAAAAGCCATTCTTTAATTTCAGTCTGGAAGGTCTAGAATACCCCTTCTCTCATCTGGACCAAATAACTCTTCCTGATCCTTATCAAGACTACTTTACAAGTTGGACCAGTTCAGACCTACCAAGGTTTTATGCTAACGACGTGCACTTCTGTTGA___GTAGTTTGACCAGTTCAAACCTACCAAGTTTTTTCCCTAACAACATGCACTTGGTCATGAACTTACAGCAAGACTTATTGGCCCTGGTTAAATAACTTTTGATAAGTCTGCTTGCAGTTCAGTCCCTGCCTTTGAGTTCATTGACTGAGAGTAAGGCTAGATGGCCCTGGGTAGAATGATTTTTTTAAGGAGTATATCTGTACAGGTTATCTAGGATTTGTTAATAAGCCAAGGGGTTGGATTGGTTGGTAAGAAGAATGGGTATTGCTAAATGATTTTTTGAAAGAGAATATCTGTACAGGCTATAGGATTTGCTTATAACTCCCTGGGAATGGGCTGGGATGGCCGGTAAGAAGAAAATGGGTATTGCTAGCCGCACCAACATTCAATTTTCAATTTTTCCCAGCGATATGCTCTCCTATTCACCATTGATAGCCTACTTTATGCGGAGTGGGCAGGTTTTCAAAAACGGAGCCATTTATGTTTGGACCAAGCCAAGGTTTCCAAATTCAAATATAAATTCAATGTATGCGATTTTCAAATTGAATGTGAA

Fln Alignment:

Contig22995___QPQLPPGFRFHPTDEELVVHYLKKKASSTPLPVTIIAEIDLYKFDPWELPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSTSAGTQKVGVKKALVFYGGRPPKGIKTNWIMHEYRLADVSRPARKKGSLRLDDWVLCRIYNKKTSAEKLALEQNESSMDVPM----EAIDEKEMVNQPSSTSIEHSGIEQNSPSSDLLNKMGPSP-----TSHNGVPPRVLPMNTNISSPNLDFFQKIITPSSAGTPKAPVQNTEFNPISSSINHPWINYDSIXXXXXXXXXXXXXXXXXXXXXXXEKEEVQSSLRLETSSPEEQ-------KPFFNFSLEGLEYPFSHLDQITLP---DPYQDYFTSWT
A9NZG8_______________QLNLPPGFRFFPTDDELVVHYLCRKAASQAIAVPIIAEVDLYKFDPWQLPEKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPI--TAKGSNKRVGIKKALVFYVGKAPKGNKTNWIMHEYRLADVNRSAKKKGSLRLDDWVLCRIYNKKSSAEKLAKEQKEWSSEEAMEQFHEEIDEKVPGILPTGNTIMNSSIEHSERTSQDSTISAPSPNCRTASNHDSRASAITSLSYN-SNP---IFEQNLNLSNARS--APMEIPELVPFFSSMNNHRTNYDSADLIPPILLTDSSCSMQSSHDLKSEKEEVQSSFRLEELMQQQQQENAGLNQQMFSFGFESLQNPFPSLDQIQPPTNNDPFQDYLASLT

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
25	75		25		0.996473
26	25			75	0.996473
27		20		80	0.999996
28			20	80	0.999996
32	81		18		0.999994
33	72			27	1.0
34		9	18	72	0.999994
35	27	72			1.0
36	72	27			1.0
40		72	18	9	0.999994
41			27	72	1.0
42		27	72		1.0
43		72		27	1.0
44			18	72	0.999994
47	18			72	0.999994
48		18		9	0.999994
167		54		18	1.0
170	54			18	1.0
172	18	81			0.999994
173	18			81	0.999994
179		81	18		0.999994
185		18	81		0.999994
188			81	18	0.999994
1266	66			33	0.997452
1268			33	66	0.997452
1269			33	66	0.997452
1526	84			15	0.999986
1527		15	84		0.999986
1528	15		84		0.999986
1702		88		11	0.923564
1703	88	11			0.923564
1704	88		11		0.923564
1819	33	66			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1084	1097	CAT CAT CAT CAT CA	14

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain