SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22569

Length: 1057 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene22569

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome c oxidase subunit 5C n=8 Tax=Poaceae RepID=COX5C_ORYSJ	-	-	3.0e-11	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	cytochrome c oxidase subunit 5c-like	-	-	4.40264e-20	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	4.40264e-20	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	4.40264e-20	81%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Sec63 domain	IPR004179	-	-
Sma3	Cytochrome c oxidase subunit Vc	IPR008432	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Annexin repeat, conserved site	IPR018252	-	-

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
27			80	20	0.995493
28	80			20	0.995493
29		80		20	0.995493
30		80		20	0.995493
31	20			80	0.995493
33			80	20	0.995493
34			80	20	0.995493
35		80		20	0.995493
37			80	20	0.995493
38		20		80	0.995493
41		60	40		1.0
43		60		40	1.0
44	60			40	1.0
120		95	5		0.997749
122	95	5			0.997749
126	5			95	0.997749
127		5		95	0.997749
128	95	5			0.997749
131	95		5		0.997749
132	95	5			0.997749
133	95			5	0.997749
135	95	5			0.997749
139		5		95	0.997749
161		14		85	1.0
454	83			16	0.994512
457			20	80	0.995493
647	12			75	0.975346
648		12	87		0.992554
657	16	83			0.994512
658	16		83		0.994512
772	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain