SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22556

Length: 515 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene22556 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	arabinogalactan protein 22 [Arabidopsis thaliana] sp\|Q9FK16.1\|AGP22_ARATH RecName: Full=Arabinogalactan peptide 22; Short=AG-peptide 22; Flags: Precursor dbj\|BAB09787.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAR24144.1\| At5g53250 [Arabidopsis	-	-	2.0e-05	50%
FL-Next	sp=Arabinogalactan peptide 22; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%
Blast2go	arabinogalactan peptide 16-like	-	-	3.33688e-25	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Arabinogalactan peptide, AGP	IPR009424	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
269		16		83	0.994512
361	40	60			1.0
369	80		20		1.0
408	91		8		0.999807
433		59	40		1.0
436	4		54		1.0
447		77	22		1.0
453	66		33		1.0
470	38		57		1.0
479		41	58		1.0
505		10	89		0.999919
506		11	88		0.999937
507	88	11			0.999952
509		87		12	0.999964

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain