SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22278

Length: 695 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene22278 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S acidic ribosomal protein P0 n=6 Tax=Andropogoneae RepID=RLA0_MAIZE	-	-	3.0e-15	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	60s acidic ribosomal protein p0	-	-	1.97783e-22	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	translational elongation	GO:0006414	Biological Process	1.97783e-22	86%
Blast2go	protein binding	GO:0005515	Molecular Function	1.97783e-22	86%
Blast2go	cytosol	GO:0005829	Cellular Component	1.97783e-22	86%
Blast2go	ribonucleoprotein complex	GO:0030529	Cellular Component	1.97783e-22	86%
Blast2go	nucleus	GO:0005634	Cellular Component	1.97783e-22	86%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L10/acidic P0	IPR001790	-	-
Sma3	Ribosomal protein 60S	IPR001813	-	-
Sma3	Ribosomal protein P2	IPR001859	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
286		8		92	0.999718
320		88	11		0.999937
364		10		90	0.90298
366	10			90	0.90298
367	10			90	0.90298
382			90	10	0.90298
396		10		90	0.90298
397	10			90	0.90298
398	10	90			0.90298
399			10	90	0.90298
402	90	10			0.90298
403	10		90		0.90298
405	90		10		0.90298
406	10	90			0.90298
416	11		88		0.923564
418			88	11	0.923564
419		88	11		0.923564
426	88	11			0.923564
428	11	88			0.923564
429			11	88	0.923564
433	88	11			0.923564
436			11	88	0.923564
477		25		75	0.996473
481	75			25	0.996473
482	75		25		0.996473
485	75			25	0.996473
488		20		80	0.995493
491		20		80	0.995493
496			20	80	0.995493
500	80	20			0.995493
501			20	80	0.995493
683	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain