SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22097

Length: 2397 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene22097
ATGGGGATGTTTGCTTTGCCTGCGTCGTGACCTTGGCTGTCACTCAATATTCAGGTTTGTTTCGGTGGAAACGCAGCGTCCACTCAGAAAGTTGTTGTAGGTGATCAACCCAGGTGTTATCACCGCCTTTTACATTAAGCTAACGACCGGCGAGGAATTTGGAAGAGGCCAAGGTCGGTTCGTTTGGCCGGGATATCTCAACGTATGGATCTCCTCGTCTTGCTTGCGGAATCTCGTAGAAATAGAGACACAGAAGTTTCCACCTTTTTCTGTCACTTAGCAGTAGGATGCTAATGGCGTCTTCAGACGAAACCCCATCAATCACATGGAACGAAAATCGGATCAAAAACATGCAGTAGTAACAGCAACGAGGATGTTGAATACGTAACGATGTTTTTAGCATATGGACGTGCAAAGAAAGTAGGACGTGGTTTCTCAGTCCGAACGTTCCAAGATATAGAAGCTAGCACACATGGACACCCATTTTCTCCCGGGTTACCTAAACTACTGTGGAACCATTTTAGATTTTATCATTTACAGTGCCAGAAGCCCCACTGGAGTAGGATAGATGACAAGTATAGTTTTGTCGTGGTGAGTTTGGGTGTGGCTCATTATATCCCATTGCTTTCAAGATTCTTCAAACTCAGACATGATCTTTGTAGACCACATAACACCAAAGGCGTTTTTGTGATGTCTGCAAGTGCTGGCATGACTTGCCATGCTCGAGCTGCATGGAGGAAACTCTCGCTGATATGCTACTATTGTGGTCCTGCATTTCCGAATATTAGTAAGATTGCTTGTGCTGTGAGCTTGGCTTGTTTTAGGTCACATCTTACCCCTCGAGTCTTGGCTGTTATTATTGGGGAGGCTTCATGGGCACGTAATAGGTGGGCTGAATCGCAAGAATTACATCCCAATTTCTATCTAAACAGTCAAGAACTCAATAGACATGCCACTTTCACTTCATCTATCTGGTCATTCGTGGAGGGACTGATTTTGGTGCTAAGGGCACTTTATTTGATTGCTTTATTCACACCAGCTATTGCCATGGCTCCATTTACCTCTGCGTTTGGAGGAAGGTATAGAGAAATGTGGCTGCAACTTGTTCATAGATCTTTGGAAAAATCAGGGGCTGCCTTTATCAAGTGGGGTCAATGGGCATCTACACGTCCTGATCTTTTCCCCAGGGATTTATGTAATGAGCTTACAAAATTGCAGACAAAGGCACCGGCACATAAATTTTCATATACACGGCAAACTATTGAAAAGGCTTTTGGTCGTAGAATTGATGACATATTTGAGGATTTTGAAGAGGAGCCAGTGGCTTCTGGCAGTATTGCACAAGTCCATAAAGCTACTCTGAGATTTCGTTATGCCGGTCAGAAGATGAACCCTATGACTGTTGCAGTGAAAGTCAGGCATCCTGGAGTTAGTGAAGTGATTCGGAGGGATTTTGTGATAATAAATTGGGTTGCAAAGGTTTCTAGTCGTTTGCCGGCACTGAGATGGCTGCGACTTGATGAAAGTGTACAACAATTTGCTGTCTTTATGTTGTCTCAAGTTGATCTTGCCAGAGAAGCTGCACAGTTGAGTCGATTTCTTTACAATTTCCGCAGGTGGAAAGACGTGTCTTTTCCCAAGCCCTTATATCCACTTGTACACCCGGCAGTTTTGGTGGAGACTTATGAACAAGGCGAGAGTGTGGCACGCTATGTTGATCAGCCAGAAGCAAACCATAAGTTTAATAGATCACTTGCTCACACTGGCACGCATACTCTCCTCAAGATGCTACTGGTGGATAATTTCATCCATGCAGATATGCATCCTGGAAATATTCTGGTTCGAATGGGACAGAGTAATCCTTCAAGCAAGCGGATTTTTCGATCGAAACCTCATGTAGTTTTCCTTGATGTGGGCATGACAGCAGAACTTTCGAGGAATGATCGGCTGAATATTTTGGAGTTCTTTAAAGCTGTTGCACGGAGGGATGGCCGGACAGCTGCAGAGTGTACACTGAAATTTTCAAGATACCAGAGCTGTCCAGATCCAAATGCCTTCATACAGGAAGTTGAGTCTTCATTCAAATTTTGGGGTTCAGCCGAAGGTGATGTAGTACATCCATCAGAGTGTATGCAAGAGTTGCTTGAACATGTGAGACGCCACAAAGTGAACATTGATGGGAATGTCTGCACTGTAATGGTGACAACATTGGTTCTTGAGGGCTGGCAGCGCAAGTTGGACCCTGATTTTAATGTTATGAACACCTTGCATACTGTTCTAAATAGATCTGATTGGGCCAAATCTCTTTCTTATACAATTGAAGGACTCATGGCCCCATAATTTTCATAAGAGCATGTTGGTCATGCTCTGTCAAAACATTTTGACTTTTCTTCACCC

Ace file of the UniGene sp_v2.0_unigene22097 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to Protein kinase-like n=1 Tax=Vitis vinifera RepID=UPI0001986357	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	probable serine threonine-protein kinase abkc-like	-	-	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	ABC-1	IPR004147	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL04

Fln msg:

Fln protein: MFLAYGRAKKVGRGFSVRTFQDIEASTHGHPFSPGLPKLLWNHFRFYHLQCQKPHWSRIDDKYSFVVVSLGVAHYIPLLSRFFKLRHDLCRPHNTKGVFVMSASAGMTCHARAAWRKLSLICYYCGPAFPNISKIACAVSLACFRSHLTPRVLAVIIGEASWARNRWAESQELHPNFYLNSQELNRHATFTSSIWSFVEGLILVLRALYLIALFTPAIAMAPFTSAFGGRYREMWLQLVHRSLEKSGAAFIKWGQWASTRPDLFPRDLCNELTKLQTKAPAHKFSYTRQTIEKAFGRRIDDIFEDFEEEPVASGSIAQVHKATLRFRYAGQKMNPMTVAVKVRHPGVSEVIRRDFVIINWVAKVSSRLPALRWLRLDESVQQFAVFMLSQVDLAREAAQLSRFLYNFRRWKDVSFPKPLYPLVHPAVLVETYEQGESVARYVDQPEANHKFNRSLAHTGTHTLLKMLLVDNFIHADMHPGNILVRMGQSNPSSKRIFRSKPHVVFLDVGMTAELSRNDRLNILEFFKAVARRDGRTAAECTLKFSRYQSCPDPNAFIQEVESSFKFWGSAEGDVVHPSECMQELLEHVRRHKVNIDGNVCTVMVTTLVLEGWQRKLDPDFNVMNTLHTVLNRSDWAKSLSYTIEGLMAP*

Protein Length: 651

Fln nts: ATGGGGATGTTTGCTTTGCCTGCGTCGTGACCTTGGCTGTCACTCAATATTCAGGTTTGTTTCGGTGGAAACGCAGCGTCCACTCAGAAAGTTGTTGTAGGTGATCAACCCAGGTGTTATCACCGCCTTTTACATTAAGCTAACGACCGGCGAGGAATTTGGAAGAGGCCAAGGTCGGTTCGTTTGGCCGGGATATCTCAACGTATGGATCTCCTCGTCTTGCTTGCGGAATCTCGTAGAAATAGAGACACAGAAGTTTCCACCTTTTTCTGTCACTTAGCAGTAGGATGCTAATGGCGTCTTCAGACGAAACCCCATCAATCACATGGAACGAAAATCGGATCAAAAACATGCAGTAGTAACAGCAACGAGGATGTTGAATACGTAACG_-_ATGTTTTTAGCATATGGACGTGCAAAGAAAGTAGGACGTGGTTTCTCAGTCCGAACGTTCCAAGATATAGAAGCTAGCACACATGGACACCCATTTTCTCCCGGGTTACCTAAACTACTGTGGAACCATTTTAGATTTTATCATTTACAGTGCCAGAAGCCCCACTGGAGTAGGATAGATGACAAGTATAGTTTTGTCGTGGTGAGTTTGGGTGTGGCTCATTATATCCCATTGCTTTCAAGATTCTTCAAACTCAGACATGATCTTTGTAGACCACATAACACCAAAGGCGTTTTTGTGATGTCTGCAAGTGCTGGCATGACTTGCCATGCTCGAGCTGCATGGAGGAAACTCTCGCTGATATGCTACTATTGTGGTCCTGCATTTCCGAATATTAGTAAGATTGCTTGTGCTGTGAGCTTGGCTTGTTTTAGGTCACATCTTACCCCTCGAGTCTTGGCTGTTATTATTGGGGAGGCTTCATGGGCACGTAATAGGTGGGCTGAATCGCAAGAATTACATCCCAATTTCTATCTAAACAGTCAAGAACTCAATAGACATGCCACTTTCACTTCATCTATCTGGTCATTCGTGGAGGGACTGATTTTGGTGCTAAGGGCACTTTATTTGATTGCTTTATTCACACCAGCTATTGCCATGGCTCCATTTACCTCTGCGTTTGGAGGAAGGTATAGAGAAATGTGGCTGCAACTTGTTCATAGATCTTTGGAAAAATCAGGGGCTGCCTTTATCAAGTGGGGTCAATGGGCATCTACACGTCCTGATCTTTTCCCCAGGGATTTATGTAATGAGCTTACAAAATTGCAGACAAAGGCACCGGCACATAAATTTTCATATACACGGCAAACTATTGAAAAGGCTTTTGGTCGTAGAATTGATGACATATTTGAGGATTTTGAAGAGGAGCCAGTGGCTTCTGGCAGTATTGCACAAGTCCATAAAGCTACTCTGAGATTTCGTTATGCCGGTCAGAAGATGAACCCTATGACTGTTGCAGTGAAAGTCAGGCATCCTGGAGTTAGTGAAGTGATTCGGAGGGATTTTGTGATAATAAATTGGGTTGCAAAGGTTTCTAGTCGTTTGCCGGCACTGAGATGGCTGCGACTTGATGAAAGTGTACAACAATTTGCTGTCTTTATGTTGTCTCAAGTTGATCTTGCCAGAGAAGCTGCACAGTTGAGTCGATTTCTTTACAATTTCCGCAGGTGGAAAGACGTGTCTTTTCCCAAGCCCTTATATCCACTTGTACACCCGGCAGTTTTGGTGGAGACTTATGAACAAGGCGAGAGTGTGGCACGCTATGTTGATCAGCCAGAAGCAAACCATAAGTTTAATAGATCACTTGCTCACACTGGCACGCATACTCTCCTCAAGATGCTACTGGTGGATAATTTCATCCATGCAGATATGCATCCTGGAAATATTCTGGTTCGAATGGGACAGAGTAATCCTTCAAGCAAGCGGATTTTTCGATCGAAACCTCATGTAGTTTTCCTTGATGTGGGCATGACAGCAGAACTTTCGAGGAATGATCGGCTGAATATTTTGGAGTTCTTTAAAGCTGTTGCACGGAGGGATGGCCGGACAGCTGCAGAGTGTACACTGAAATTTTCAAGATACCAGAGCTGTCCAGATCCAAATGCCTTCATACAGGAAGTTGAGTCTTCATTCAAATTTTGGGGTTCAGCCGAAGGTGATGTAGTACATCCATCAGAGTGTATGCAAGAGTTGCTTGAACATGTGAGACGCCACAAAGTGAACATTGATGGGAATGTCTGCACTGTAATGGTGACAACATTGGTTCTTGAGGGCTGGCAGCGCAAGTTGGACCCTGATTTTAATGTTATGAACACCTTGCATACTGTTCTAAATAGATCTGATTGGGCCAAATCTCTTTCTTATACAATTGAAGGACTCATGGCCCCATAA___TTTTCATAAGAGCATGTTGGTCATGCTCTGTCAAAACATTTTGACTTTTCTTCACCC

Fln Alignment:

Contig22097___MFLAYGRAKKVGRG--------FSVRTFQDIEASTHGHPFSPGLPKLLWNHFRFYHLQCQKPHWSRIDDKYSFVVVSLGVAHYIPLLSRFFKLRHDLCRPHNTKGVFVMSASAGMTCHARAAWRKLSLICYYCGPAFPNISKIACAVSLACFRSHLTPRVLAVIIGEASWARNRWAESQELHPNFYLNSQELNRHATFTSSIWSFVEGLILVLRALYLIALFTPAIAMAPFTSAFGGRYREMWLQLVHRSLEKSGAAFIKWGQWASTRPDLFPRDLCNELTKLQTKAPAHKFSYTRQTIEKAFGRRXXXXXXXXXXEPVASGSIAQVHKATLRFRYAGQKMNPMTVAVKVRHPGVSEVIRRDFVIINWVAKVSSRLPALRWLRLDESVQQFAVFMLSQVDLAREAAQLSRFLYNFRRWKDVSFPKPLYPLVHPAVLVETYEQGESVARYVDQPEANHKFNRSLAHTGTHTLLKMLLVDNFIHADMHPGNILVRMGQSNPSSKRIFRSKPHVVFLDVGMTAELSRNDRLNILEFFKAVARRDGRTAAECTLKFSRYQSCPDPNAFIQEVESSFKFWGSAEGDVVHPSECMQELLEHVRRHKVNIDGNVCTVMVTTLVLEGWQRKLDPDFNVMNTLHTVLNRSDWAKSLSYTIEGLMAP
B8LL04_______________MFLAYERIKKVGRGPIKKVGCALAIRKLQDIGSSTHGSPSSPGVPRILWNHVRFHHSQNKKSYWSRIDDKYGSVQESARNAHSIPMLSGFSKLRYDLCRPHNSKGFSMIPASVGMTYHAQTAWRRLSLLCCYGGPTFPAISKIARAVSLACVRSHLTPRILAVIIGEASWAHNSWAESQELYPSVPLNSQVINRHAIFTSSIWSFLEGLILVIRALYLITLFTPAIVMAPLASMFEGRYRERWLQLVHRSLEKAGAAFIKWGQWAATRPDLFPRDLCKELAKLHTKAPAHKFSYTQHTIEKAFSRRIDEIFEDFEEEPVASGSIAQVHKATLKFRYPGQKVKPMIVAVKVRHPGVSEVIRRDFVIINWVAKLSSCLPALRWLRLEESVQQFAVFMLSQVDLSREAAHLNRFLYNFRRWKDVSFPKPLYPLVHPAVLVETYEQGESVARYVDQPEGNYRFNRSLAHTGTHTLLKMLLVDNFIHADMHPGNILVRMGQSNASSKRLFQSRPHVVFLDVGMTAELSKNDRLNILEFFKAVAQRDGRTAAECTLKFSRYQSCPDPNAFIQEVESSFKYWGSPEGDVVHPAECMQELLEHVRHHKVNIDGNVCTVMVTTLVLEGWQRKLDPDFNVMNTLHTVLIRSDWAKSLSYTIEELMAP

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
1896			75	25	0.996473
1915	75	25			0.996473
1919	50		50		1.0
2136	66	33			0.997452
2137	66	33			0.997452
2143		33	66		0.997452
2144	33		66		0.997452
2145	66	33			0.997452
2146	66		33		0.997452
2149			10	90	0.90298
2230	11	88			0.923564
2361	20		80		0.995493
2365		80		20	0.995493
2367	20		80		0.995493
2369		80		20	0.995493
2371	80			20	0.995493
2372	20		80		0.995493
2373		20	80		0.995493
2382	20	80			0.995493
2383	20		80		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain