SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22044

Length: 1254 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene22044

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MazG domain containing protein	-	-	2.0e-07	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	dctp pyrophosphatase 1-like	-	-	0.0	84%

Source	InterPros	Term	Type	Identity
Sma3	NTP pyrophosphohydrolase MazG, putative catalytic core	IPR004518	-	-
Sma3	EAR	IPR009039	-	-
Sma3	NTP Pyrophosphohydrolase MazG-related, RS21-C6	IPR011394	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADR7

Fln msg:

Fln protein: MNGKGEISDGDSMKGTDSGVTIEELQRKMADFTRERDWDRFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWNAAEKEHLGEELSDVLLYLVRLADICGVDLGEAALRKVKKNCLKYPVETCKGSSKKYTHYANGVNEEELRVDNL*

Protein Length: 151

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGAGTGACAGAGTTCCCGCCGCTGGGAATCCGTGTCTCGCTTTGTGCTCTTTCATTGTCTGGACAGAGTGATTTGATTTAGATAAAGGCGTTCTCTCGTGTTGAATTTTTTCGTCTCCTTGATTTGTGCTGGTGCAGATCTGTTTCAATTCTGGTCTGTGTTGGGTGTTTGGTTACGGGCCAGCAAA_-_ATGAATGGGAAGGGGGAAATTTCAGATGGGGATTCTATGAAGGGGACAGACAGCGGCGTTACGATTGAAGAGTTGCAGAGGAAAATGGCGGACTTCACCAGGGAGAGAGATTGGGATCGATTCCATAGTCCTCGGAACCTTCTCCTGGCTCTCGTGGGAGAAGTGGGTGAACTGTCTGAGATATTTCAGTGGAAGGGTGAAGTTCCGAAAGGTCTTCCAGATTGGAATGCTGCAGAGAAGGAGCATCTTGGTGAAGAGTTGTCAGACGTTCTACTCTATTTGGTAAGACTTGCAGACATCTGTGGGGTGGACCTTGGTGAAGCAGCGCTAAGAAAAGTTAAGAAAAATTGTCTCAAATATCCTGTTGAAACATGCAAGGGTTCCTCGAAGAAGTACACGCATTATGCCAATGGTGTGAATGAAGAGGAGTTAAGAGTTGATAATCTGTGA___GTTATACACCAAAATTTGTGATGCTGCTTCAAAACGTGTTTTTGGTTATACATTTGAAATGCTACAGTGTACAGTTCAGATATTGTGCTGAAGAATTTTGTGAATTGCTTTTACTTCAGGAGTCTCTCGCTCAGGTTTTAACAAGAGGGGTGAGAATGAAACATGGAATCATGAATATCAAAGGAAATCATACAGTTGTCTTTATGATATGATGTTGTTGAAGTTTTCAATAGTTGCCAAATGGAACCTTAATAATTTGATGAAAATATTCATTGTGCAGAAAGCTATCTTATATGATAATGTTCAGTACCAGTTTTTGAGAGTGAACTTAGAAATGGGCTGTGTTGGAGATACAAAATTGGTTGTGTGACTGAAACTGGCAGGGTTGACATCCAGCAGGCATCTAGCCTATGGATTTAAATCATTCACTAGTGATCCAAGATATAGCACTACCTCTGTGCAGGCGCTAATTTCAAGGTTACGCAGACTTTTTGGGCAATGTTTTCTTCCCATATGCTCTATCTCTGCATACAAACAAAGCAATGTTAGTCTTTGATATGCATCTGAACTTTAGAGTAACGTCTTAAATAACC

Fln Alignment:

Contig22044___MNGKGEISDGDSMK--GTDSGVTIEELQRKMADFTRERDWDRFHSPRNXXXXXXXXXXXXSEIFQWKGEVPKGLPDWNAAEKEHLGEELSDVLLYLVRLADICGVDLGEAALRKVKKNCLKYPVETCKGSSKKYTHYANGVNEEELRVDNL
D5ADR7_______________MKGEGAISDEDSAKEPSAGGGVTIEELQGKMAEFTRERNWDQFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWNAAEKEHLGEELSDVLLYLVRLADICEVDLGEAALRKVKKNGLKYPVERCKGSSKKYTHLTNVVNEEEFRVDHI

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
61		66	33		0.997452
62	33			66	0.997452
68			33	66	0.997452
76	33			66	0.997452
77		33		66	0.997452
270			80	20	0.995493
274			20	80	0.995493
278	80	20			0.995493
283	80		20		0.995493
284		20	80		0.995493
285	80			20	0.995493
288		20		80	0.995493
289	20		80		0.995493
291	80			20	0.995493
292		20	80		0.995493
304		16	83		0.994512
306	83			16	0.994512
308			16	83	0.994512
310		83	16		0.994512
314	83			16	0.994512
317		16	83		0.994512
318	83			16	0.994512
320	83			16	0.994512
321		16	83		0.994512
323		16	83		0.994512
324	83			16	0.994512
325		16		83	0.994512
326	16			83	0.994512
345		85	14		0.993533
349			85	14	0.993533
350	85		14		0.993533
356		85	14		0.993533
357			14	85	0.993533
359		28		57	1.0
362			85	14	0.993533
364	14			85	0.993533
376	88	11			0.923564
380		11	88		0.923564
385	88	11			0.923564
389			11	88	0.923564
393	88			11	0.923564
394		11	88		0.923564
670	90		10		0.90298
675	88			11	0.923564
676	88			11	0.923564
677	88		11		0.923564
678	88		11		0.923564
679		11		88	0.923564
684		11	88		0.923564
687		11	88		0.923564
688	11	88			0.923564
703		16		83	0.994512
717			16	83	0.994512
764			88	11	0.923564
833	42			57	1.0
983	13			86	0.999973
984	20		66		1.0
1017	30			69	1.0
1079	33		66		1.0
1231	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain