SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21957

Length: 2170 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene21957
CGTCGTGACCTTGGCTGTCACTCAGTTGCTTTTTTTATGAGGCACTTGTCTGGGGTCGATATTTTAAGTGGCAGGATAGTTCCTCTGCATGCAATGCCGCTGACACTGTTTGCTTCTTCGCAAAGCTGATTATTGCCTTCGTATTCACTAGTCTTCTTTTGGGTTTCCCTTGTGCCCACAAACAGTTCGCAAGGAAAGACCAGAGGCAGAATTCGGTTTCATTCAAAGAAACAACAGTTGAGTATGGAAACTGGTACAGGCAATGGAACATCTCCCTTTGCAACAGATAAAATGAAGTTTGAGGCAGTGACCAAGTTCGAAACAGGTATCACGGGGGACTTTTTTGACCAATTTGATGACCTGCTGGACTTTTCCAATGAAGAAATTGGAGCACCCATTGGAGAAAGCAGTATCAACTGTCCCAAGGATGGCATTTTAGGAGGCAACTCTGTGACAGAAGCTGTGAGTTCCAATTTCAGAGTAGACGAGAGCGACTCTGGAAAACTGTGTATTCCTAGCGATGATTTGGCAGAGCTAGAATGGCTTTCAAGCTTTGACCCATTCCTAGAACATGTACCGACATATCCTTATGAACCTGAACCGACATATCCTTATGAACCTGATTTTGGAGCTGAAGTCAAGGAAAAATATGAAGAAGGGCAGAATTCTGATAAGTTCAGAAGCCCGAGTCCTACATCGGTACTGGGGCAGAATTCTGATAAATTCAGAAGCCTGAGTCCTACATCGGTTCTAGAAAGCAACTCGGGGAAAATTTCAACTTTTAGTCCAGAAATCACTGTACCAGGAAAAGCAAGAAGCAAGAGGTCTAGAGCCCCAGTTTGCAAATGGGCTTCTAGGATTATTTCCCCTGCATCTTCAGATGGGTTATTGGAGAATGGTCCAAACTCTTTCAGCAGTGATTCAGGACACTTCGTTACCAAGCCAGTGGAACCTGAACCCCTGAAGAAAATCATCAAGACAAACCACTGGGATAAGAAGAAGGGGCAGGATTCAATTCAGGTCAGGAAATGCTTGCACTGTGGAGTACAGAAAACCCCACAGTGGAGGGCTGGGCCCAAGGGTCCTAAGACACTATGTAATGCCTGCGGTGTAAGATACAAATCTGGTAGGCTTCTGCCCGAATACAGACCTGCTGCAAGTCCTACATTTTCAGTTATGAAACACTCGAACTCCCACAAGAAAGTTCTTGAAATGAGGCGTCAAAGGGAGCTGATGATGCAGGAACAGACCTCCCAAGCAAAACAAGCATATCTGGGATCCGGAGATGATTGCTTGGTGAACATTGGTGAAGATTATAGTGGTTCTGATTTTTTACCATGACAGAAGAGGGGTAAAAGTGCAATTTTGTATATAGCAGAGGCTCAAATCCTATTAGAGGCATATCCACAGATTGGTCCCATGTCCTTTAATGAAAAACATTCTGCATTTCGATTTCACAGTCTAGAGTTCATGATTCCAGTGGATGAGTTACAATACATTGCCTCTGTTCTATATACAAAAAGCATGGAAGGGTATGGAAGGGACATCATGGTTGTTTATTGTAGACAGAGAGCATGTCATTTTTATTGAGGGGAGGGATTGAGTTCCGAAGTTATATTCATTGAATGAATTCTTTTTGTAGGGTTAGTTTATTTGTTGCATCTGTGAAGTTGGGAGGGGGGTACTTGAGGAAAAGGTCCAATTTCCCAATTGAGAAAACAAGATTACTTCTTATCCCAAAAGGCAAGTTATAATGAGGATGTTCAGGAGTTCTGTTGAGGTGGTTAGGCTCTGGCAAATCTTGCAGGAAGAAACAGCATAGCAACTGTGTAGGAAGAACCATTATTTGGCATTGCTAATTCTACAATTTTTTTGCCTTTTGTTCTAGAAGTCATAGAGCGATGTTTCACACAGTTCTTGTTCTTGTCAGTTCAGATGGTAATTATTTTAGTGACTTTTTGAGTTTTGAATAGACTGCAGCATTTGGTAGTTGAACTCAAATAGACTGCAGCACTTGGTAATTGAGGAAATAATACAAATCAGAATGTGGTTGACTGGTTTCTTGCAAGTTTTGCAACATCTCTATGGCATGGCTTTGGCTTCCATTGAATTAGATGGTGACAATGATCATAATGTGGAAGTTATAATGTTGTAGTTGATGATTATTTAG

Ace file of the UniGene sp_v2.0_unigene21957

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GATA transcription factor 12 [Arabidopsis thaliana] sp\|P69781.1\|GAT12_ARATH RecName: Full=GATA transcription factor 12 dbj\|BAH30596.1\| hypothetical protein [Arabidopsis thaliana] gb\|AED93492.1\| GATA transcription factor 12 [Arabidopsis thaliana]	-	-	9.99995e-41	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	gata transcription factor	-	-	0.0	50%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Zinc finger, NHR/GATA-type	IPR013088	-	-
Sma3	Transcription factor, GATA, plant	IPR016679	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKB3

Fln msg: your sequence is longer than subject: 366 - 321

Fln protein: METGTGNGTSPFATDKMKFEAVTKFETGITGDFFDQFDDLLDFSNEEIGAPIGESSINCPKDGILGGNSVTEAVSSNFRVDESDSGKLCIPSDDLAELEWLSSFDPFLEHVPTYPYEPEPTYPYEPDFGAEVKEKYEEGQNSDKFRSPSPTSVLGQNSDKFRSLSPTSVLESNSGKISTFSPEITVPGKARSKRSRAPVCKWASRIISPASSDGLLENGPNSFSSDSGHFVTKPVEPEPLKKIIKTNHWDKKKGQDSIQVRKCLHCGVQKTPQWRAGPKGPKTLCNACGVRYKSGRLLPEYRPAASPTFSVMKHSNSHKKVLEMRRQRELMMQEQTSQAKQAYLGSGDDCLVNIGEDYSGSDFLP*

Protein Length: 367

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGCTTTTTTTATGAGGCACTTGTCTGGGGTCGATATTTTAAGTGGCAGGATAGTTCCTCTGCATGCAATGCCGCTGACACTGTTTGCTTCTTCGCAAAGCTGATTATTGCCTTCGTATTCACTAGTCTTCTTTTGGGTTTCCCTTGTGCCCACAAACAGTTCGCAAGGAAAGACCAGAGGCAGAATTCGGTTTCATTCAAAGAAACAACAGTTGAGT_-_ATGGAAACTGGTACAGGCAATGGAACATCTCCCTTTGCAACAGATAAAATGAAGTTTGAGGCAGTGACCAAGTTCGAAACAGGTATCACGGGGGACTTTTTTGACCAATTTGATGACCTGCTGGACTTTTCCAATGAAGAAATTGGAGCACCCATTGGAGAAAGCAGTATCAACTGTCCCAAGGATGGCATTTTAGGAGGCAACTCTGTGACAGAAGCTGTGAGTTCCAATTTCAGAGTAGACGAGAGCGACTCTGGAAAACTGTGTATTCCTAGCGATGATTTGGCAGAGCTAGAATGGCTTTCAAGCTTTGACCCATTCCTAGAACATGTACCGACATATCCTTATGAACCTGAACCGACATATCCTTATGAACCTGATTTTGGAGCTGAAGTCAAGGAAAAATATGAAGAAGGGCAGAATTCTGATAAGTTCAGAAGCCCGAGTCCTACATCGGTACTGGGGCAGAATTCTGATAAATTCAGAAGCCTGAGTCCTACATCGGTTCTAGAAAGCAACTCGGGGAAAATTTCAACTTTTAGTCCAGAAATCACTGTACCAGGAAAAGCAAGAAGCAAGAGGTCTAGAGCCCCAGTTTGCAAATGGGCTTCTAGGATTATTTCCCCTGCATCTTCAGATGGGTTATTGGAGAATGGTCCAAACTCTTTCAGCAGTGATTCAGGACACTTCGTTACCAAGCCAGTGGAACCTGAACCCCTGAAGAAAATCATCAAGACAAACCACTGGGATAAGAAGAAGGGGCAGGATTCAATTCAGGTCAGGAAATGCTTGCACTGTGGAGTACAGAAAACCCCACAGTGGAGGGCTGGGCCCAAGGGTCCTAAGACACTATGTAATGCCTGCGGTGTAAGATACAAATCTGGTAGGCTTCTGCCCGAATACAGACCTGCTGCAAGTCCTACATTTTCAGTTATGAAACACTCGAACTCCCACAAGAAAGTTCTTGAAATGAGGCGTCAAAGGGAGCTGATGATGCAGGAACAGACCTCCCAAGCAAAACAAGCATATCTGGGATCCGGAGATGATTGCTTGGTGAACATTGGTGAAGATTATAGTGGTTCTGATTTTTTACCATGA___CAGAAGAGGGGTAAAAGTGCAATTTTGTATATAGCAGAGGCTCAAATCCTATTAGAGGCATATCCACAGATTGGTCCCATGTCCTTTAATGAAAAACATTCTGCATTTCGATTTCACAGTCTAGAGTTCATGATTCCAGTGGATGAGTTACAATACATTGCCTCTGTTCTATATACAAAAAGCATGGAAGGGTATGGAAGGGACATCATGGTTGTTTATTGTAGACAGAGAGCATGTCATTTTTATTGAGGGGAGGGATTGAGTTCCGAAGTTATATTCATTGAATGAATTCTTTTTGTAGGGTTAGTTTATTTGTTGCATCTGTGAAGTTGGGAGGGGGGTACTTGAGGAAAAGGTCCAATTTCCCAATTGAGAAAACAAGATTACTTCTTATCCCAAAAGGCAAGTTATAATGAGGATGTTCAGGAGTTCTGTTGAGGTGGTTAGGCTCTGGCAAATCTTGCAGGAAGAAACAGCATAGCAACTGTGTAGGAAGAACCATTATTTGGCATTGCTAATTCTACAATTTTTTTGCCTTTTGTTCTAGAAGTCATAGAGCGATGTTTCACACAGTTCTTGTTCTTGTCAGTTCAGATGGTAATTATTTTAGTGACTTTTTGAGTTTTGAATAGACTGCAGCATTTGGTAGTTGAACTCAAATAGACTGCAGCACTTGGTAATTGAGGAAATAATACAAATCAGAATGTGGTTGACTGGTTTCTTGCAAGTTTTGCAACATCTCTATGGCATGGCTTTGGCTTCCATTGAATTAGATGGTGACAATGATCATAATGTGGAAGTTATAATGTTGTAGTTGATGATTATTTAG

Fln Alignment:

Contig21957___SNEEIGAPIG------------ESSINCPKDGILGGNSVTEAVSSNFRVDESD------------------SGKLCIPSDDLAELEWLSSFDPFLEHVXXXXXXXXXXXXXXXDFGAEVKEKYEEGQNSDKFRSPSPTSVLGQNSDKFRSLSPTSVLESNSGKISTFSPEITVPGKARSKRSRAPVCKWASRIISPASSDGLLENGPNSFSSDSGHFVTKPVEPEPLKKIIKTNHWDKKKGQDSIQVRKCLHCGVQKTPQWRAGPKGPKTLCNACGVRYKSGRLLPEYRPAASPTFSVMKHSNSHKKVLEMRRQR----ELMMQEQTS
B8LKB3_______________SCEDIGAPTGGAGCSHGEKSHPESAFSEPNSGDSSVTETEAAAAAAATCDEVSRPAPNVVEVDGSGGVCLFSGELCVPADALEELEWLSTF--------------------VDDSFVAVPELVVP---VDSVREPSER----EESQRKQS----NALLAGAGRT-------WVLGRARSKRSR---CVNPAVFVSVALKNDEPRTGRKA--AMKGSVCVAP--PAAVKKAKKGCQSRSGGGQES---RRCSHCLVQKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPALSPTFSSGLHSNCHRRVVEIRRQRIDQQQPLSQQETS

SNPs (tot: 58)

Position	A %	C %	G %	T %	Probability
36		33		66	0.997452
37	66		33		0.997452
41	75			25	0.996473
43	25		75		0.996473
50			25	75	0.996473
54		25	75		0.996473
55	25		75		0.996473
56		25	50		0.995533
413	88	11			0.923564
415		88	11		0.923564
417	88	11			0.923564
422		88	11		0.923564
423		88	11		0.923564
425	88			11	0.923564
426	88		11		0.923564
427			88	11	0.923564
428		11	88		0.923564
430		11		88	0.923564
431			88	11	0.923564
446	88			11	0.923564
447	88			11	0.923564
449			11	88	0.923564
579		75		25	0.996473
607	66		33		0.997452
795			16	83	0.994512
1102		11		88	0.923564
1104		88		11	0.923564
1109		11	88		0.923564
1110			88	11	0.923564
1113			11	88	0.923564
1114	88	11			0.923564
1115	88			11	0.923564
1117	88			11	0.923564
1118		11		88	0.923564
1122	88	11			0.923564
1125		88		11	0.923564
1354	16			83	0.994512
1355	83	16			0.994512
1357	83			16	0.994512
1358	83			16	0.994512
1506	12	87			0.992554
1509			12	87	0.992554
1525		87		12	0.992554
1597		16	77	5	1.0
1598		5	77	16	1.0
1599	5	16	77		1.0
1601	16			83	1.0
1611	86			13	1.0
1612	81	18			1.0
1615	4		13	81	1.0
1617		13		86	1.0
1618	86	13			1.0
1621		86	13		1.0
1622	86		13		1.0
1623		13		86	1.0
1626	86			13	1.0
1629		9	86	4	0.999642
1867	82			17	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain