SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21919

Length: 909 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene21919

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	LOB domain-containing protein 15 [Arabidopsis thaliana] sp\|Q8L5T5.2\|LBD15_ARATH RecName: Full=LOB domain-containing protein 15; AltName: Full=ASYMMETRIC LEAVES 2-like protein 11; Short=AS2-like protein 11 gb\|AAL38034.1\|AF447889_1 LOB DOMAIN 15 [Arabidopsi	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	lob domain-containing protein	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	83%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Oleosin	IPR000136	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Lateral organ boundaries, LOB	IPR004883	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Uncharacterised conserved protein UCP038127, LOB	IPR017394	-	-
Sma3	Asymmetric leaves, AS2/LOB	IPR017414	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
133		28		71	1.0
135	28		71		1.0
137			71	28	1.0
141		14		85	0.993533
143		14	71		0.984337
144			71	28	1.0
146	14			85	0.993533
147		28	71		1.0
148	14			85	0.993533
150	71		14	14	0.984337
152	14			85	0.993533
153		85	14		0.993533
154	85		14		0.993533
156			16	33	1.0
157	16			33	1.0
163			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain