SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21876

Length: 1923 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene21876

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9T9S4_RICCO	-	-	50%
FL-Next	sp=Probable receptor-like protein kinase At4g39110; Arabidopsis thaliana (Mouse-ear cress).	-	-	46%
Blast2go	receptor-like protein kinase	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	66%
Blast2go	regulation of unidimensional cell growth	GO:0051510	Biological Process	66%
Blast2go	post-embryonic development	GO:0009791	Biological Process	66%
Blast2go	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	66%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	66%
Blast2go	chloroplast	GO:0009507	Cellular Component	66%
Blast2go	plasma membrane	GO:0005886	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Isopenicillin N synthase, conserved site	IPR002057	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Peptidase S16, lon N-terminal	IPR003111	-	-
Sma3	Protein of unknown function DUF604	IPR006740	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9T020

Fln msg: Distance to subject end: 436 aas, your sequence is shorter than subject: 421 - 878

Fln protein: MISPRMGTLPILSWKGKLVLCTWGFLAAQSLSAFTPTDNYLIDCGASKNTTVEGQIFEADSYSSSLLSTSQDILATVQSANVPSDLYLTARIFTQRSSYTFQINLQGWHWVRLYFYPVPHGSYDLKSAIFSVTTDQFVLLHNFSINTDAKSTLYLFKEYLINVASDSLTLNFAPTGNSLAFINAIEVVSVPDELLSNQPVTLPAISSFVGLSGYALETAYRINVGGTLVTPINDTLGRTWVPDQSYLTSSGTAKSVSVLASSIKYTTTVTSEIAPNPVYATADEMANANVTNPNFNITWMFSVDPDFSYFVRMHFCDIVSSALYQLVFNVYINSETAINALDLSSKTLVLSTPYYTDFVVNASSESKNISVSVGPSNVDTITPNAILNGLEILKISNGAGSLDGPYSVNGVIPSSSKSSSK

Protein Length: 422

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTCGGTTAAGTGCGAGATAAGGCAATGGGGGCTTATTGATATTTGGATTTTGTATTCATGTCCCTTGGTATGTGGGTTCTGATTTAGAACAATCTAAATCTGGATTCACATGCAGGCATTGATAATAGTATTGGGCATTGCGAAATTTTGTGTGTACATCTTAGGAGATTGGGTTCAGGGTCCATCCCCATTGTCATATTGCAGTTAGGCTTTTTGTAGTTTATGATTGAAGGACACCATGATCTGAATCTTATTTTATTCTTGTTCCTTGAAAAACATTCAGGCCTGGTTTGAGTTGCATTGCTAGGGTGTTGGTACGTCCGTCTGCACAATCAGTGCTCGTTACGGTGGTTGGGGATATTGATGTGTTTGCAGAGAGGGTGCCCATTTCCAAAACAGGCCTTTCAGGGATATTGTCTGCAAAGCATTTGACAAAAGGGCTTCCGTGCTGGGTTTTTGGTTACCCAAATAGTGCAGACATTGTTCAAATTGGCCAAACATCGGAATTCAAGCTGCCAACTGTTGGCATCTCCGAAGACTTTGTATCTAGAGCAACAGGCTGGAGGGTTTCTGTTGCCTGGTCTGGGATACTAGGGGAGAGGAGGAAAAATTGAGAGTAGTAGTTCTCGACAAT_-_ATGATCAGTCCGAGGATGGGCACCCTGCCCATCCTCTCGTGGAAGGGGAAACTTGTGCTCTGTACATGGGGTTTTCTAGCTGCTCAATCTCTATCTGCCTTCACTCCAACAGACAATTACTTAATTGATTGCGGCGCATCAAAAAACACCACCGTTGAAGGGCAGATCTTTGAGGCGGATTCGTACTCATCATCCCTTCTTTCCACAAGCCAGGATATCCTGGCCACTGTTCAGAGCGCCAACGTTCCTTCGGATCTCTATTTGACAGCTAGAATCTTTACTCAGCGCTCCTCTTACACCTTCCAAATTAATCTGCAAGGCTGGCACTGGGTACGTCTGTATTTCTATCCTGTTCCACACGGTAGCTATGATCTTAAATCTGCAATATTTTCTGTTACAACAGATCAATTCGTTCTCTTGCACAACTTCAGCATCAACACAGATGCAAAGAGTACTCTGTATTTGTTTAAGGAGTACCTCATCAATGTGGCCTCTGATAGCTTGACATTGAACTTTGCTCCTACGGGCAATTCACTTGCATTCATAAATGCCATCGAGGTTGTTTCAGTTCCAGATGAGTTGTTGTCTAACCAGCCTGTTACCTTACCTGCTATTTCTTCTTTTGTTGGGCTCTCTGGATATGCTTTGGAGACAGCATACAGGATCAATGTTGGGGGTACACTGGTCACGCCTATCAATGACACTCTTGGTAGAACTTGGGTACCTGATCAGAGTTATTTGACTTCTAGTGGTACTGCCAAATCTGTCAGTGTCCTTGCCAGCAGCATTAAGTACACCACAACAGTCACTTCAGAGATTGCCCCTAACCCTGTCTATGCCACAGCAGATGAGATGGCAAATGCAAATGTGACCAACCCCAATTTTAACATCACTTGGATGTTTTCTGTGGATCCAGATTTTAGCTATTTTGTTCGTATGCACTTCTGTGATATTGTGAGCTCAGCTCTCTACCAGTTGGTATTTAACGTCTATATTAATAGCGAAACTGCCATCAATGCACTCGATCTTTCTTCGAAGACATTGGTCTTGTCTACTCCATATTACACAGACTTTGTGGTGAATGCTTCGTCTGAATCAAAAAACATATCTGTCAGTGTTGGTCCTTCAAATGTTGATACTATTACTCCCAATGCCATCCTTAATGGCCTGGAGATTTTGAAGATTAGCAATGGTGCAGGAAGTCTGGATGGTCCTTATTCTGTTAATGGTGTCATTCCTAGTTCATCGAAAAGCAGCAGCAAG

Fln Alignment:

Contig21876___PRMGTLPILSWKGK----LVLCTWGFLAAQSLSA-----------FTPTDNYLIDCGA-SKNTTVEGQIFEADXXXXXXXXXXQDI-LATVQSANVPSDLYLTARIFTQRSSYTFQINLQGWHWVRLYFYPVPHGSYDLKSAIFSVTTDQFVLLHNFSI-NTDAKSTLYLFKEYLINVASDSLTLNFAPTGNSLAFINAIEVVSVPDELLSNQPVTLPAISSFVGLSGYALETAYRINVGGTLVTPINDTLGRTWVPDQSYLTSSGTAKSVSVLASSIKYTTTVTSEIAPNPVYATADEMANANVTNPNFNITWMFSVDPDFSYFVRMHFCDIVSSALYQLVFNVYINSETAINALDLSSKTLVLSTPYYTDFVVNASSESKNISVSVGPSNVDTITPNAILNGLEILKISNGAGSLDGPYSVNG
Q9T020_______________PNIFTVLVIDFSSKPSMALLLAILLFLSGPSASAVAAAAVGPATGFKPADDILIDCGSKSSSKTPDGRVFKSDQETIQYIEAKEDIQVSAPPSDKVASPIYLTARIFREEATYKFHLTRPGWHWVRLHFLAFPNDKFDLQQATFSVLTEKYVLLHNFKISNNNNDSQAAVQKEYLVNMTDAQFALRFRPMKSSAAFINAIEVVSAPDELISDSGTALFPVIGFSGLSDYAYQSVYRVNVGGPLIMPQNDTLGRTWIPDKEFLKDENLAKDVKTTPSAIKYPPEVTPLIAPQTVYATAVEMANSLTIDPNFNVSWNFPSNPSFNYLIRLHFCDIVSKSLNDLYFNVYINGKTAISGLDLSTVAGNLAAPYYKDIVVNATLMGPELQVQIGPMGEDTGTKNAILNGVEVLKMSNSVNSLDGEFGVDG

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
262	88		11		0.999952
263		88		11	0.999952
265	88		11		0.999952
269		11		88	0.999952
273	87		12		0.999964
274	87	12			0.999964
276		87	12		0.999964
278		12		87	0.999964
280		14		78	0.999974
282		14		85	0.999981
283	14			85	0.999981
304	86		13		0.999973
306		12		87	0.999964
307		87	12		0.999964
308	87			12	0.999964
310	12		87		0.999964
317			12	87	0.999964
319		12	87		0.999964
322		12		87	0.999964
324		12	87		0.999964
325	12	87			0.999964
416			11	88	0.923564
417		88	11		0.923564
420	87			12	0.992554
421	87		12		0.992554
422	87			12	0.992554
425		12	87		0.992554
426			88	11	0.923564
428	11	88			0.923564
564	66			33	1.0
719		80	20		0.995493
726		40		60	1.0
728		20		80	0.995493
729			80	20	0.995493
730		20	80		0.995493
731	20		80		0.995493
1016		11		88	0.923564
1017	11	88			0.923564
1018	11	88			0.923564
1020		88		11	0.923564
1021	88		11		0.923564
1022	11	88			0.923564
1024	11		88		0.923564
1030	90		10		0.90298
1047	90	10			0.90298
1055		10		90	0.90298
1202	87		12		0.992554
1206	87		12		0.992554
1208	87		12		0.992554
1210	87	12			0.992554
1213		87	12		0.992554
1215	87			12	0.992554
1218	12		87		0.992554
1219	87	12			0.992554
1220			87	12	0.992554
1221		12	87		0.992554
1222	12			87	0.992554
1263	71	14		14	0.984337
1653	20			80	0.995493
1656	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain