SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21733

Length: 1756 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene21733

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SGL domain containing protein	-	-	7.0e-05	19%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	protein	-	-	0.0	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	58%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	58%

Source	InterPros	Term	Type	e value	Identity
Sma3	Six-bladed beta-propeller, TolB-like	IPR011042	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP33

Fln msg: your sequence is longer than subject: 364 - 322

Fln protein: MADLLNRRTILVFLLGSLLHHWVSIEARTLHTINIKYPQLFPEGFDWDKENQHFIVGSLQFGTLHTVSDAGVAEDFIKDKDYAGKASVVGIRVDSKRSRVLAVIHRPADPNGESGLNALAGYDLKSGKRVLFVELDQNAVANDVAVDPYGNAFVTNSAGNFIWKVTLDGHVSVFAKDPIFTSQDIIVEDDLVRFCGLNGIVYNKRGALLVTQSNSGKLFEVDLHDGSVRLVQTSKTLPWADGITVRRDGVALVVSHHTAWFLKTRDNWAEATIVDEVPLNASRFATAITLREDDRAYVLNCYLRDIVNKIGRDVFSIEEIEFPKEAAGESVWLILLLVAGLLYVFFWRFQMQHFAKNLSKKRV*

Protein Length: 365

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCTCTCAGCTTGTTCATCTGGGTTTCCTCTTCAAATCTCTATTGGGATTTCACATTTCTTCATATTCTTCTGGTAGGTTTTTATGCATCATAAATTCTTATATTTATGATTTATACGCTCATGTTCAACCGGGTCTCCTCCTCTGCAAACCCTTTTCTGGAGTTTTCAGATTCCACAGTATTCTTCCGGTGGGTTTTGTTATTCATCAGTTCTCTTCAGAACTTGATAAAATATTAAATCTAAGCTTTCTCTATTATTTCTGTGGTTATTCGCCATCAAAAGATCTGACTATACGGGTTTTCG_-_ATGGCTGATCTTTTGAATCGTAGAACAATTCTTGTGTTTCTGTTAGGATCCCTTCTCCATCACTGGGTTTCCATAGAAGCAAGAACCCTTCACACAATAAACATTAAGTACCCTCAACTCTTCCCAGAGGGCTTTGATTGGGACAAGGAAAACCAGCATTTCATAGTGGGTTCTCTTCAATTTGGCACTCTTCATACAGTCTCAGATGCAGGTGTCGCAGAGGATTTTATCAAGGATAAGGACTATGCAGGCAAAGCATCAGTTGTGGGAATCAGAGTAGATTCTAAACGGAGCAGGGTGCTTGCTGTGATTCACAGGCCTGCAGACCCCAACGGGGAATCAGGGCTCAATGCCCTTGCAGGCTATGACTTGAAATCTGGCAAAAGGGTACTCTTTGTAGAGCTTGATCAGAATGCGGTGGCAAATGATGTAGCTGTGGACCCGTATGGGAATGCGTTTGTCACAAACTCGGCAGGAAATTTTATATGGAAAGTTACATTAGATGGTCATGTTAGTGTCTTTGCAAAAGACCCAATTTTTACTTCACAGGACATTATAGTAGAAGATGATTTAGTTAGGTTTTGTGGGCTCAATGGCATTGTTTACAATAAGAGAGGTGCCCTCTTGGTCACCCAGAGCAACTCTGGGAAACTGTTTGAAGTTGACCTTCATGATGGATCAGTTCGTCTTGTGCAGACCTCAAAGACTTTGCCTTGGGCTGATGGGATTACTGTGCGGAGAGATGGGGTAGCTCTAGTGGTTTCTCATCATACAGCATGGTTTCTGAAAACCCGTGATAATTGGGCTGAGGCTACTATTGTGGATGAGGTTCCTCTGAATGCCTCCAGGTTTGCCACTGCCATAACTCTGAGAGAAGATGACAGGGCATATGTTTTGAATTGCTATTTGCGTGACATCGTGAATAAGATTGGCCGAGACGTATTCAGCATCGAAGAGATTGAGTTTCCTAAAGAGGCAGCTGGGGAAAGCGTATGGCTCATTTTGCTCTTGGTTGCAGGACTTCTATATGTATTCTTTTGGAGGTTCCAGATGCAGCACTTCGCAAAGAACTTGAGTAAGAAGAGAGTATGA___TTTATTATTTCATTCCATGTCCTGTATTATTTTTGTACTCTTTTATTTGCCTTAGAACTCGAGGGACATACCACTGTTCTGATAATAATCTTTATGAGCCTCTGGACTGGGGTTTGAAAATTATGTTGATAGGGCTGTTTGTTCTGGATTACAAAATTGTTAGGTGTAATTGTTAGGTGTAGGGCATATGATTTTTTTGTTTCATTGTTTTCAAAATTCTAAGTGAGGTATGGATAATTATTAGAGGGAGGGTATATTATTTTTCAGGCCTTAGAAGTTCAGAATTTGAATGACATTGTGATTTTTAAGCCTTAAGTTTAGAATTTGAATGACAT

Fln Alignment:

Contig21733___LVFLLG----SLLHHWVSIEARTLHTINIKYPQL--FPEGFDWDKENQHFIVGSLQFGTLHTVSDAGVAEDFIKDKDYAGKASVVGIRVDSKRSRVLAVIHRPADPNGESGLNALAGYDLKSGKRVLFVEL----DQNAVANDVAVDPYGNAFVTNSAGNFIWKVTLDGHVSVFAKDPIFTSQDIIVEDDLVRFCGLNGIVYNKRGALLVTQSNSGKLFEVDLHDGSVRLVQTSKTLPWADGITVRRDGVALVVS-HHTAWFLKTRDNWAEATIVDEVPLNASRFATAITLREDDRAYV
A9NP33_______________IVFALGIALWALITGFLNLEDSKLKGELVEYESQGWLREYASWDAQNQRFLVSFVE-GGLGQIRMDGKEETLVKDEDYAGNATL-GLEIDRPRNRVLVVV---ADLLGNR-YSALAAYDMKTWRRLFLTELSRLGDEKLFADDVTVDATGNAYVTDTKGNKIWRVSPDGSEVTEIRSPVFTSFPSKLP---LSLAGLNGIVFHPDGFLLTIHSWAGVLFKVSLDGSSVRAVNMSALLLLGDGLALLSSNRLVVASGMPSARIVESTDGWQSASLTHRYVGPMHRIATCATVKDDGKVFV

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
28		75	25		1.0
33		77	22		0.999999
35		22	77		0.999999
40			22	77	0.999999
41		22		77	0.999999
42		77		22	0.999999
43	77		22		0.999999
46	22			77	0.999999
47		22	77		0.999999
48			77	22	0.999999
49		22	77		0.999999
50	22			77	0.999999
101			81	18	0.999994
429	90		10		0.90298
431	90		10		0.90298
435	90		10		0.90298
437			10	90	0.90298
441			10	90	0.90298
442	90	10			0.90298
444	10	90			0.90298
447		90	10		0.90298
448	90			10	0.90298
449	90			10	0.90298
451			11	88	0.923564
490	80			20	0.995493
492		20		80	0.995493
493			20	80	0.995493
893	80		20		0.995493
894	20		80		0.995493
896	80		20		0.995493
897	20		80		0.995493
898	80			20	0.995493
1085	88		11		0.923564
1086			88	11	0.923564
1088	11			88	0.923564
1091	88	11			0.923564
1092	11		88		0.923564
1152	87	12			0.992554
1153	12			87	0.992554
1167	12	87			0.992554
1169	12			87	0.992554
1170		87		12	0.992554
1363	83	16			0.999991

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain