SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21510

Length: 895 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene21510

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA polymerase n=1 Tax=Elaeis guineensis RepID=B3TLS5_ELAGV	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	dna-directed rna polymerases and iii kda polypeptide	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	0.0	-
Sma3	RNA polymerase, Rpb8	IPR005570	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
325	70		10		0.999998
328	90			10	0.90298
331	90	10			0.90298
333	90	10			0.90298
334	90			10	0.90298
620	23			17	1.0
622	5			82	0.999919
821	20			80	0.995493
822	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain