SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21488

Length: 2241 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene21488
CGTCGTGACCTTGGCTGTCACTCATGTGCTTCAGATTTTTCTTACAGCGGAATTGATTGAATTAGCCGGAGGCGTTAGGGCTTTGACTGAGGTGAGGGCGCGGAGTCCGAGGAAGGAATCCGGACGTTTTCGTGTTTTGTTTGTATATACGTACGTGTCCTTGGCTGTCGAGTCCTGTCAATATGCGGAGATTTGTAGCCGATAGATTTAGGAGGATAGCTGCCCAAGCAATGGCAAACAACTTTTCTTCATCTTCTAATGCTAGCAAGAAATGTCTCGGGGGATATCCTTCTTCCCCGCTTACCCTCGAGACTATCAATCCCAAGGTTTTGAAATGTGAATATGCAGTTCGTGGAGCAATTGTTGCACAGGCCCAGAGGCTACAAGAGGAATTGCAAACAAAGCAATCTTCACTTCCTTTTGATGAGATTATTTACTGTAATATTGGCAATCCACAATCCTTAGGTCAACAGCCTGTAACATTTTTCCGAGAGGTGCTAGCTTTATGTGACCATCCAGCTCTTTTGGACAAAGATGAAACACATGGCATCTTTAGTTCTGATTCCATATCGAGGGCATGGCAAATTCTAGATGGCATTCCAGGAAGAGCTACTGGAGCTTACAGTCACAGTCAGGGTATCAAGGCATTACGTGATGCAATTGCTGCTGGTATTGCTGAACGTGATGGTTTTCCATCCAATTCAGAGGACCTTTTTTTGACTGATGGTGCAAGTCCTGGGGTTCATATGATGATGCAACTTCTTATAAGGTCAGAGAAGGATGGAATTCTTTGCCCAATTCCGCAGTACCCACTTTACTCTGCATCCATTGCTCTTCATGGTGGGACCTTGGTTCCATACTACCTTAATGAGGCAACAGGATGGGGTTTAGAAATTTCTGAGGTTAAACAACAACTAGAAGCAGCACGCTTAAATGGTATCGATGTTCGGGCTATTGTCATCATAAATCCAGGAAATCCTACAGGTCAGGTTCTTTCAAAGGAAAATCAAGTGGAGATTGTGGAGTTTTGTAAGAATGAAGGTTTACTTCTCCTTGCTGATGAGGTTTATCAGGAAAACATTTATGCAGATAACAAGGAATTCCACTCTTTCAAAAAGATAGCGAGGAGCATGGGTTATGGTGAAAAGGACATTTCTCTTGTTTCTTTCCAGTCAATTTCCAAAGGTTATTATGGCGAGTGTGGAAAAAGAGGTGGATATATGGAGGTAACTGGAATTGACAACGATATCAAGGATCAACTGTATAAAGTGGCATCTGTGAATCTTTGTTCCAACATTTCTGGTCAGATACTTGCAAGTCTTGTAATGAATCCCCCAAAGAGTGGAGACGAATCATTTGAATTGTTCTTTGCAGAGAGGGATAGTATTCTTTCATCTCTAGCAAGGCGTGCCAAGACCTTAGTGGATGCATTGAACCAGTTAGAAGGTGTTACCTGCAATGAAGCAGAAGGTGCCATGTATGTCTTCCCTTGCATTCACCTACCACAAAAAGCAATCAAGGCTGCAGAAGCAGTAAACATGGTGCCAGATGCTTTCTATTGTCAGAGATTATTGGAGGCCACAGGCATTGTGGTTGTTGCAGGTTCCGGATTTGGTCAGGTACCTGGCACGTGGCATTTTCGAAGCACAATTTTGCCCCAAGAGGATAAAATGCCAGCCATAGTTTCTCGCTTGACAACATTCCACCAGAAGTTTATGGAAGAATTTCGTGACTAAGCATATTTAAATATATGTTTACCCGTGCTTCAAGTTAAATCAAAAGTACTACGTGATATGAGTTGCATGAAACAGTGCTTATTTTATGTCGGGCAACATTTAAAACATTATCTATCCAAGCTCTCTCTCTCATAACAGAATTGCTGTTTCTTCAATAAACTGGGTTGATATCATGATATATTGGTATTCACATCAATTTCAACTAGTTTGCAGGTTGGTAGTGCTGCTGGATTCAAATCCAAGGTGATATTGTATTAATGATATGAATTTTATTGAGCATTTTGCAAAATATCACACTTTCTAGAAATTGTTTTTCATCTACTAAAGAATAGCATTGGTTGCAAGTTGGCACAACCCAACCAATGCCATGGAATAGTTGGAAGTTTTCTATAAAACTGAAGGTGCAGGTACAGTAACAAGTTATTTGTATTTTCCAAGTGAAATTCTAGGTGACATGTGAAGACCTCGGGCACTGAGTTACACTAGGCTTGATAATGGCTCGACT

Ace file of the UniGene sp_v2.0_unigene21488 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative alanine aminotransferase [Arabidopsis thaliana]	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	alanine aminotransferase	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alanine transaminase.	EC:2.6.1.2	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	88%
Blast2go	Carbon fixation in photosynthetic organisms	00710	88%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	88%
Blast2go	Metabolic pathways	01100	88%

Source	GOs	Term	Type	Identity
Blast2go	response to hypoxia	GO:0001666	Biological Process	88%
Blast2go	L-alanine catabolic process, by transamination	GO:0019481	Biological Process	88%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	88%
Blast2go	copper ion binding	GO:0005507	Molecular Function	88%
Blast2go	L-alanine:2-oxoglutarate aminotransferase activity	GO:0004021	Molecular Function	88%
Blast2go	ATP binding	GO:0005524	Molecular Function	88%
Blast2go	protein binding	GO:0005515	Molecular Function	88%
Blast2go	mitochondrion	GO:0005739	Cellular Component	88%
Blast2go	chloroplast	GO:0009507	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	1-aminocyclopropane-1-carboxylate synthase	IPR001176	-	-
Sma3	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	-
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACH7

Fln msg: your sequence is longer than subject: 518 - 329

Fln protein: MRRFVADRFRRIAAQAMANNFSSSSNASKKCLGGYPSSPLTLETINPKVLKCEYAVRGAIVAQAQRLQEELQTKQSSLPFDEIIYCNIGNPQSLGQQPVTFFREVLALCDHPALLDKDETHGIFSSDSISRAWQILDGIPGRATGAYSHSQGIKALRDAIAAGIAERDGFPSNSEDLFLTDGASPGVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLNEATGWGLEISEVKQQLEAARLNGIDVRAIVIINPGNPTGQVLSKENQVEIVEFCKNEGLLLLADEVYQENIYADNKEFHSFKKIARSMGYGEKDISLVSFQSISKGYYGECGKRGGYMEVTGIDNDIKDQLYKVASVNLCSNISGQILASLVMNPPKSGDESFELFFAERDSILSSLARRAKTLVDALNQLEGVTCNEAEGAMYVFPCIHLPQKAIKAAEAVNMVPDAFYCQRLLEATGIVVVAGSGFGQVPGTWHFRSTILPQEDKMPAIVSRLTTFHQKFMEEFRD*

Protein Length: 519

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTGCTTCAGATTTTTCTTACAGCGGAATTGATTGAATTAGCCGGAGGCGTTAGGGCTTTGACTGAGGTGAGGGCGCGGAGTCCGAGGAAGGAATCCGGACGTTTTCGTGTTTTGTTTGTATATACGTACGTGTCCTTGGCTGTCGAGTCCTGTCAAT_-_ATGCGGAGATTTGTAGCCGATAGATTTAGGAGGATAGCTGCCCAAGCAATGGCAAACAACTTTTCTTCATCTTCTAATGCTAGCAAGAAATGTCTCGGGGGATATCCTTCTTCCCCGCTTACCCTCGAGACTATCAATCCCAAGGTTTTGAAATGTGAATATGCAGTTCGTGGAGCAATTGTTGCACAGGCCCAGAGGCTACAAGAGGAATTGCAAACAAAGCAATCTTCACTTCCTTTTGATGAGATTATTTACTGTAATATTGGCAATCCACAATCCTTAGGTCAACAGCCTGTAACATTTTTCCGAGAGGTGCTAGCTTTATGTGACCATCCAGCTCTTTTGGACAAAGATGAAACACATGGCATCTTTAGTTCTGATTCCATATCGAGGGCATGGCAAATTCTAGATGGCATTCCAGGAAGAGCTACTGGAGCTTACAGTCACAGTCAGGGTATCAAGGCATTACGTGATGCAATTGCTGCTGGTATTGCTGAACGTGATGGTTTTCCATCCAATTCAGAGGACCTTTTTTTGACTGATGGTGCAAGTCCTGGGGTTCATATGATGATGCAACTTCTTATAAGGTCAGAGAAGGATGGAATTCTTTGCCCAATTCCGCAGTACCCACTTTACTCTGCATCCATTGCTCTTCATGGTGGGACCTTGGTTCCATACTACCTTAATGAGGCAACAGGATGGGGTTTAGAAATTTCTGAGGTTAAACAACAACTAGAAGCAGCACGCTTAAATGGTATCGATGTTCGGGCTATTGTCATCATAAATCCAGGAAATCCTACAGGTCAGGTTCTTTCAAAGGAAAATCAAGTGGAGATTGTGGAGTTTTGTAAGAATGAAGGTTTACTTCTCCTTGCTGATGAGGTTTATCAGGAAAACATTTATGCAGATAACAAGGAATTCCACTCTTTCAAAAAGATAGCGAGGAGCATGGGTTATGGTGAAAAGGACATTTCTCTTGTTTCTTTCCAGTCAATTTCCAAAGGTTATTATGGCGAGTGTGGAAAAAGAGGTGGATATATGGAGGTAACTGGAATTGACAACGATATCAAGGATCAACTGTATAAAGTGGCATCTGTGAATCTTTGTTCCAACATTTCTGGTCAGATACTTGCAAGTCTTGTAATGAATCCCCCAAAGAGTGGAGACGAATCATTTGAATTGTTCTTTGCAGAGAGGGATAGTATTCTTTCATCTCTAGCAAGGCGTGCCAAGACCTTAGTGGATGCATTGAACCAGTTAGAAGGTGTTACCTGCAATGAAGCAGAAGGTGCCATGTATGTCTTCCCTTGCATTCACCTACCACAAAAAGCAATCAAGGCTGCAGAAGCAGTAAACATGGTGCCAGATGCTTTCTATTGTCAGAGATTATTGGAGGCCACAGGCATTGTGGTTGTTGCAGGTTCCGGATTTGGTCAGGTACCTGGCACGTGGCATTTTCGAAGCACAATTTTGCCCCAAGAGGATAAAATGCCAGCCATAGTTTCTCGCTTGACAACATTCCACCAGAAGTTTATGGAAGAATTTCGTGACTAA___GCATATTTAAATATATGTTTACCCGTGCTTCAAGTTAAATCAAAAGTACTACGTGATATGAGTTGCATGAAACAGTGCTTATTTTATGTCGGGCAACATTTAAAACATTATCTATCCAAGCTCTCTCTCTCATAACAGAATTGCTGTTTCTTCAATAAACTGGGTTGATATCATGATATATTGGTATTCACATCAATTTCAACTAGTTTGCAGGTTGGTAGTGCTGCTGGATTCAAATCCAAGGTGATATTGTATTAATGATATGAATTTTATTGAGCATTTTGCAAAATATCACACTTTCTAGAAATTGTTTTTCATCTACTAAAGAATAGCATTGGTTGCAAGTTGGCACAACCCAACCAATGCCATGGAATAGTTGGAAGTTTTCTATAAAACTGAAGGTGCAGGTACAGTAACAAGTTATTTGTATTTTCCAAGTGAAATTCTAGGTGACATGTGAAGACCTCGGGCACTGAGTTACACTAGGCTTGATAATGGCTCGACT

Fln Alignment:

Contig21488___MMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLNEATGWGLEISEVKQQLEAARLNGIDVRAIVIINPGNPTGQVLSKENQVEIVEFCKNEGLLLLADEVYQENIYADNKEFHSFKKIARSMGYGEKDISLVSFQSISKGYYGECGKRGGYMEVTGIDNDIKDQLYKVASVNLCSNISGQILASLVMNPPKSGDESFELFFAERDSILSSLARRAKTLVDALNQLEGVTCNEAEGAMYVFPCIHLPQKAIKAAEAVNMVPDAFYCQRLLEATGIVVVAGSGFGQVPGTWHFRSTILPQEDKMPAIVSRLTTFHQKFMEEFRD
D5ACH7_______________MMMQLLIRSEKDGILCPIPQYPLYSASIALQGGTLVPYYLNEATGWGLEISEVKQQLEAARVRGIDVRAIVIINPGNPTGQVLSKENQEEIVQFCKNEGLVLLADEVYQENVYVDNKKFHSFKKIARSMGYGEKDICLVSFQSVSKGYYGECGRRGGYMEVTGFDNNIKDQLYKVASVNLCSNISGQILASLVMNPPKSGDESFEMFFAERDGILSSLARRAKTLVDALNQLEGVTCNEAEGAMYVFPRIHLPQQAIKAAEAVNMVPDAFYSQRLLEATGIVTVPGSGFGQVPGTWHFRSTILPPEDKIPTIVSRMTTFHQKFMEEFHD

SNPs (tot: 210)

Position	A %	C %	G %	T %	Probability
463		90		10	0.90298
464			10	90	0.90298
465	10			90	0.90298
466			10	90	0.90298
470		10		90	0.90298
471	10			90	0.90298
472			10	90	0.90298
475		90	10		0.90298
476			10	90	0.90298
478		10	90		0.90298
480	90	10			0.90298
514		88	11		0.923564
518	90	10			0.90298
521			10	90	0.90298
522	10			90	0.90298
523		90	10		0.90298
524	10			90	0.90298
526	10	90			0.90298
527		90	10		0.90298
529		20		80	0.999996
532	90		10		0.90298
533		90	10		0.90298
534			20	80	0.999996
535	10			90	0.90298
536	10	90			0.90298
537	10			90	0.90298
538		10	90		0.90298
540	10			90	0.90298
541		10	90		0.90298
546			88	11	0.923564
547			11	88	0.923564
548	11			88	0.923564
551		88	11		0.923564
556		11	88		0.923564
559	88		11		0.923564
560	88			11	0.923564
562		77		22	0.999999
563			33	66	1.0
565		11		88	0.923564
567	25		75		1.0
569	25			75	1.0
571		25	75		1.0
574	25			75	1.0
575			25	75	1.0
576		12	25	62	1.0
578	75	25			1.0
579	25			75	1.0
581		75	25		1.0
582	25			75	1.0
584			25	75	1.0
636		83	16		0.994512
637	16	83			0.994512
639			83	16	0.994512
640	83		16		0.994512
643	16	83			0.994512
644			16	83	0.994512
645		16	83		0.994512
649		83	16		0.994512
650	83		16		0.994512
651	83			16	0.994512
656	83		16		0.994512
658		16		83	0.994512
695	92		7		0.999602
697		88	3		0.999079
700	11		88		1.0
706	8			91	1.0
708			8	91	1.0
710		8		91	1.0
713			8	91	1.0
714	8		91		1.0
716			8	91	1.0
775	5	94			0.998744
776			5	91	0.995208
777		8		91	1.0
779	8			91	1.0
780	5		91	2	0.995208
781		94	5		0.998894
782			5	94	0.998894
786		6		93	0.99903
787			6	93	0.99903
788	6		93		0.99903
790	93		6		0.99903
886		93	6		0.999364
888	93		6		0.999364
908	4			86	0.999539
944	90			9	0.999872
947	90		9		0.999872
951	14		4	80	1.0
952	4	9		80	0.999537
953	9		90		0.999872
955	90	9			0.999872
956	85	4			0.999726
960	85		14		1.0
962	80		4		1.0
968	83			3	1.0
971		16		83	1.0
978			7	92	0.999602
980	92	7			0.999602
981		7		88	0.998862
1209			9	90	0.999872
1212	9			90	0.999872
1218	90		10		0.999898
1223		89	10		0.999919
1234		88	11		0.999937
1239		11	5	83	0.999887
1241	5		11	82	0.999919
1242	5	11		76	0.999894
1244	12	87			0.999964
1255		87	12		0.999964
1257		13		86	0.999973
1261		86	13		0.999973
1419	11		88		0.999952
1420	88		11		0.999952
1425		12	87		0.999964
1428		12		87	0.999964
1430	88	11			0.999937
1431	88			11	0.999937
1433	22			77	1.0
1435		5	75	20	1.0
1436		10	90		0.999898
1437	5			75	1.0
1440	10		10	75	0.999571
1441	10		90		0.999898
1443		10	90		0.999898
1451			88	11	0.999952
1454	88	11			0.999952
1600		96		3	0.986325
1650	3	96			0.988939
1651		96	3		0.988939
1652	96			3	0.988939
1653			3	96	0.988939
1654	3	96			0.988939
1655		3		96	0.988939
1658	96	3			0.988939
1659	96	3			0.988939
1660	3			96	0.988939
1661	2			97	0.97849
1662			2	97	0.97849
1667		2		97	0.97849
1682	97		2		0.972772
1684		97	2		0.972772
1686		2	97		0.972772
1688	97		2		0.972772
1690		2		97	0.972772
1695	97			2	0.972772
1696		2		97	0.972772
1697	2		97		0.972772
1699		97	2		0.972772
1713	2			97	0.977151
1714		2		97	0.979771
1737		96	3		0.984346
1748		96	3		0.987242
1762	87			1	1.0
1765	33			66	1.0
1766			33	29	1.0
1773		33	66		1.0
1775	33			66	1.0
1778			33	66	1.0
1780		33	66		1.0
1783		66	33		1.0
1786	62	33	3		1.0
1807		5		94	0.998578
1813	91	2	5		0.995912
1815	94		5		0.998894
1817	75		18	6	1.0
1830		6	90	3	0.997952
1831		6	93		0.999364
1836		3	90		0.997952
1838	83	6		10	1.0
1841		10		80	1.0
1842	10	6		80	1.0
1845		14		85	1.0
1846	14			85	1.0
1847	14			85	1.0
1849	3	3	14	78	1.0
1851		14		85	1.0
1852	14		85		1.0
1854	85		14		1.0
1856	3	14		82	1.0
1857			17	82	1.0
1862	8			92	0.999718
1897		8	91		0.999807
1959			88	11	0.999937
1963	88		11		0.999937
1964	11		5	83	0.999887
1966	11	82		5	0.999919
1967		88	11		0.999952
1970	11		88		0.999952
1973	87			12	0.999964
1976		12		87	0.999964
1977			12	87	0.999964
1978	12			87	0.999964
1980			12	87	0.999964
2010	15			84	0.999986
2074	40	60			1.0
2075		20	40	40	1.0
2076	20		40	40	1.0
2079		40	60		1.0
2082			40	40	1.0
2084		60		40	1.0
2086			60	40	1.0
2087	20	80			0.999996
2089	40	40	20		1.0
2090	50			50	1.0
2093	50			50	1.0
2094		87		12	0.992554
2100		50		50	1.0
2101			50	50	1.0
2159		25	75		0.996473
2188	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain